PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444808.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 317aa    MW: 34324.8 Da    PI: 9.2533
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.84.9e-3870129362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+ lkcprCds+ntkfCy+nny+l+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  XP_016444808.1  70 EAGLKCPRCDSSNTKFCYFNNYNLAQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRSK 129
                     6779*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3653122IPR003851Zinc finger, Dof-type
PfamPF027015.2E-3272127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.47873127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSFSSFPVYL DHPNLQQLQQ VDHHQQGNPG LENSQLPTAA PPAQVGGSPG SIRPGSMVDR  60
ARLAKIPLPE AGLKCPRCDS SNTKFCYFNN YNLAQPRHFC KSCRRYWTRG GALRSVPVGG  120
GCRRNKRSKS TNNSSKTAGS NNTAERQIGT TSTSTSASPS SCSKEITGQH FSQSSIHLTP  180
LMAAFQNLNH QYGGFQPPPL VSTQNNGELG HEMGFQIGGN STNNLQAATT GGSDYHHHQW  240
RLPSLAATNL YPFQGERIEA TSSGISHQDS VVRMEENNQG LNSTKQFLGT MENNQYWGGN  300
AWTGFSGLNS SSAGHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5389773e-55AJ538977.1 Nicotiana tabacum cDNA-AFLP-fragment BT31-M2-065.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444808.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A1S3XXZ70.0A0A1S3XXZ7_TOBAC; dof zinc finger protein DOF2.4-like
STRINGXP_009612449.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-40OBF-binding protein 3