PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444730.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 278aa    MW: 31269.9 Da    PI: 6.7764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19176226255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+ +g  +r++lg+f ta eAaka+++a+ k++g
  XP_016444730.1 176 HYRGVRQRP-WGKYAAEIRDPTRRG--ARVWLGTFNTAVEAAKAYDRAAFKMRG 226
                     7********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-32175235IPR001471AP2/ERF domain
PROSITE profilePS5103223.841176234IPR001471AP2/ERF domain
PfamPF008471.2E-13176226IPR001471AP2/ERF domain
CDDcd000188.10E-32176234No hitNo description
SuperFamilySSF541716.54E-23176236IPR016177DNA-binding domain
SMARTSM003806.9E-38176240IPR001471AP2/ERF domain
PRINTSPR003671.0E-13177188IPR001471AP2/ERF domain
PRINTSPR003671.0E-13216236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MECFDEYFAL EKIRNHLFGD FSPKTLKFGA ELTSNRTCSN IMTESSSSQS ESASSDSLPF  60
DFLSDSFDFE ADFFQFGDEV SNSSSESANS VHNSTNFIML ELEPTISSSD YEKPQVIIDL  120
TSPKLSNVSD RKPSLKIDLP PVKKFEWIGF CNSTTQSNSI VSVTMQQKRK TEEKRHYRGV  180
RQRPWGKYAA EIRDPTRRGA RVWLGTFNTA VEAAKAYDRA AFKMRGSKAI LNFPLEVGKN  240
LSYSSSAVDG GVKRRKESDA CGEEKGVKKV ERCKEEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-32175237163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2115270.0AF211527.1 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 1 (ACRE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609421.11e-179PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A1S3XXX80.0A0A1S3XXX8_TOBAC; ethylene-responsive transcription factor 5-like
STRINGXP_009609421.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-45ethylene responsive element binding factor 5