PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016444726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 25431.3 Da PI: 5.9692 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ +++ lG ++W++ a+ g++R++k+c++rw +yl XP_016444726.1 8 KGPWLEEEDERLASVIAILGERRWDALAKASGLRRSGKSCRLRWMNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 64 | 106 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l+v++ kq+G++ W++I + ++ gRt++++k++w+++l XP_016444726.1 64 ITEDEERLIVQLQKQFGNK-WSKIVKQLP-GRTDNEIKNYWRSHL 106 59*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.287 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-27 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.446 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-13 | 64 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-10 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MQEEKLRKGP WLEEEDERLA SVIAILGERR WDALAKASGL RRSGKSCRLR WMNYLRPNLK 60 HGHITEDEER LIVQLQKQFG NKWSKIVKQL PGRTDNEIKN YWRSHLRKKT MIYEQDCSGS 120 NTSTNSELKS SFGKDDCSSA DSLTDEMEVS NYSIDHSSNE TRLSDWIPSW TYEQSQMEHH 180 MYLCRLNICS CYPQCFSEDN NSSISTWDDT SSSIWEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-27 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-27 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 5e-38 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 5e-38 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444726.1 | 1e-161 | PREDICTED: transcription factor MYB48-like | ||||
TrEMBL | A0A1S3XXP8 | 1e-159 | A0A1S3XXP8_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009625011.1 | 1e-158 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 2e-55 | myb domain protein 27 |