PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444534.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 183aa    MW: 21199.9 Da    PI: 7.3849
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-181770457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    + ++++eq++ Le+ F +++++  e++ +LA++lg++ rq+++W+qNrRa++k+
  XP_016444534.1 17 KKRLNQEQIKLLESSFDSTKKLEPEKKLQLARELGIPPRQISIWYQNRRARWKN 70
                    56799***********************************************95 PP
2HD-ZIP_I/II106.12.7e-3416107293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eq+klLE+sF++++kLepe+K +lareLg+ prq+ +W+qnrRAR+k+++lE dy+aL+ ++++  +e+ +Leke+e+Lr el++
  XP_016444534.1  16 NKKRLNQEQIKLLESSFDSTKKLEPEKKLQLARELGIPPRQISIWYQNRRARWKNQNLEIDYNALQLKLETALSEKLQLEKETERLRGELQK 107
                     79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.1471171IPR001356Homeobox domain
SMARTSM003895.2E-161375IPR001356Homeobox domain
SuperFamilySSF466896.13E-181380IPR009057Homeodomain-like
PfamPF000464.1E-161770IPR001356Homeobox domain
CDDcd000861.03E-131772No hitNo description
Gene3DG3DSA:1.10.10.601.7E-201878IPR009057Homeodomain-like
PRINTSPR000312.2E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000312.2E-55167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNSQNLQKYQ SLPNHNKKRL NQEQIKLLES SFDSTKKLEP EKKLQLAREL GIPPRQISIW  60
YQNRRARWKN QNLEIDYNAL QLKLETALSE KLQLEKETER LRGELQKVNQ MLIALNGESA  120
INFPSCDVSL SSCCEERGSS SFQDVISYST TWVHAHEANN LQFNELYALI GLEEGSNNCR  180
SAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791458.11e-132PREDICTED: homeobox-leucine zipper protein ATHB-52-like
RefseqXP_016444534.11e-132PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1S3XXD71e-130A0A1S3XXD7_TOBAC; homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1U7XKP71e-130A0A1U7XKP7_NICSY; homeobox-leucine zipper protein ATHB-52-like
STRINGXP_009791458.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-31homeobox protein 52