PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444431.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 235aa    MW: 27290.3 Da    PI: 6.5128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+  v+++G ++W+  +++ g+ R++k+c++rw +yl
   XP_016444431.1 14 RGAWSEEEDNKLKAFVERFGHPNWRQLPKHAGLMRCGKSCRLRWMNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ + eE+el+++++k++G++ W+ Ia++++ gR+++++k+ w+ +
   XP_016444431.1  67 KGNYSLEEEELIIKLHKEHGNR-WSVIAARLP-GRSDNDVKNQWHAH 111
                      7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.156965IPR017930Myb domain
SuperFamilySSF466891.16E-2911108IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221568IPR009057Homeodomain-like
CDDcd001679.81E-111661No hitNo description
SMARTSM007172.4E-1766114IPR001005SANT/Myb domain
PROSITE profilePS5129419.29766116IPR017930Myb domain
PfamPF002491.9E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2569115IPR009057Homeodomain-like
CDDcd001678.00E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVRTPSVDKN GIKRGAWSEE EDNKLKAFVE RFGHPNWRQL PKHAGLMRCG KSCRLRWMNY  60
LRPGLKKGNY SLEEEELIIK LHKEHGNRWS VIAARLPGRS DNDVKNQWHA HLKKRAKTNT  120
NNNSPIMEQF SESSQSGSQS EQYSHKVSEQ EAGCDTASVN AVDTSVEVSS TDLYSSFSLL  180
NGMDWIEEDH IRSMEQLPAD FFNFCWTNPI DNFQTEPFDN FQTEPLDNFW RQPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141187110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRAKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766826.11e-178PREDICTED: myb-related protein Myb4-like isoform X1
RefseqXP_016444431.11e-178PREDICTED: myb-related protein Myb4-like isoform X1
TrEMBLA0A1S3XWW61e-177A0A1S3XWW6_TOBAC; myb-related protein Myb4-like isoform X1
TrEMBLA0A1U7VPE41e-177A0A1U7VPE4_NICSY; myb-related protein Myb4-like isoform X1
STRINGXP_009766826.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-49myb domain protein 14