PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016444409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 536aa MW: 55816 Da PI: 8.5912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016444409.1 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + XP_016444409.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-7 | 65 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.036 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.1E-5 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.49E-7 | 137 | 162 | No hit | No description |
PROSITE profile | PS50157 | 8.746 | 142 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 66 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MPADPDNSSA MNDSTGSGEV SVSSSGNQVP PQKESAKKKR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKRVYVCP ETTCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DVLAQESAKA VPEKPPNVTN EEPKTQAIAA SSSPPPPTPM ASPPAAESQP 240 LPPALPPPAA PTTLTPAAIP PSTTVISFVS SVQNPELREN PNPNSTGTAG KQVMEETTAL 300 ASLTGSCSSS SSSCSNGSTS SNVFGSLFAS STASGSMPSQ APGFTDLFRA VAPERVPEMA 360 PPSSAEPISL CLAMSHGSSI FRPAGQERRQ YAPVPQPAMS ATALLQKAAQ MGAAATSSSL 420 LRGLGVMSSS SPSNGQQEWS GRPMETNGAS LAAGLGLGLP CDAGSGLKEL MLGTPSVFGP 480 KHPTLDLLGL GMAASGGPSP GLSALLTSMG SNLDMATAAG SFGSGDFSGK DLGRNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-31 | 138 | 199 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-31 | 138 | 199 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803272.1 | 0.0 | PREDICTED: putative uncharacterized protein FLJ22184 | ||||
Refseq | XP_016444409.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-174 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A1S3XX08 | 0.0 | A0A1S3XX08_TOBAC; protein indeterminate-domain 2-like | ||||
TrEMBL | A0A1U7YGN5 | 0.0 | A0A1U7YGN5_NICSY; Uncharacterized protein | ||||
STRING | XP_009803272.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-107 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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