PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444318.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 338aa    MW: 38117.6 Da    PI: 7.3698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+d++k  G g W+  +++ g++R++k+c++rw++yl
   XP_016444318.1 14 KGAWTPIEDKILIDYIKVNGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.21.4e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_016444318.1  67 RGNITPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.38961IPR017930Myb domain
SuperFamilySSF466895.47E-2812108IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-131461IPR001005SANT/Myb domain
CDDcd001671.67E-91661No hitNo description
PROSITE profilePS5129425.00262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2465116IPR009057Homeodomain-like
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002496.9E-1567110IPR001005SANT/Myb domain
CDDcd001671.35E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRKPCCSKE GLNKGAWTPI EDKILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKLQQGV  120
PPGQPNHITS SINRQRPRSS HAKSSKSGEV TQLNKNNQED TVPQDSQYLL TNVGLGGSSS  180
SSSPYLVVRT KAIRNPVEFL RFHVDNSNLD NDNYDKVMAE DLAIENANTI VASSSLSVSS  240
LSEKQQPVSE STPTFSGELE NYNFNFMFGF DMDDPFLSEL LNAPDICENL ENTTTVGDSC  300
TKNEKERSYF PSNYSQTTLF AEETQRNDLE LWINGFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800391.10.0PREDICTED: myb-related protein Myb4-like isoform X2
RefseqXP_016444318.10.0PREDICTED: myb-related protein Myb4-like isoform X2
TrEMBLA0A1S3XWK00.0A0A1S3XWK0_TOBAC; myb-related protein Myb4-like isoform X2
TrEMBLA0A1U7YEK70.0A0A1U7YEK7_NICSY; myb-related protein Myb4-like isoform X2
STRINGXP_009800390.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-63myb domain protein 3