PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444178.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 183aa    MW: 20697.2 Da    PI: 4.4951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.2e-0865961955
                    HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    ++  Lrel+P +      K++ a+iL  A++YI+ Lq
  XP_016444178.1 65 RIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 96
                    7999*******9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.21E-844100No hitNo description
PROSITE profilePS5088812.3414695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1156119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1065100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-56596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEFNKENELE KQHESRDEGE DEINLATENG NNTDEMLNYF HSLHNVRESN SRNTTRWQGE  60
RVDIRIKALR ELIPGCDKVD QASILDDAIK YIQALQQLHQ ITSMRMGLYM SEGGMMQMPQ  120
MEPTNGIMAN QTVPPFPPPT SSSLSGLQMV PQFQGPFTPQ FLQSTAYTMP LSPSFFTPSS  180
PAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444178.11e-135PREDICTED: transcription factor PIF1-like
TrEMBLA0A1S3XW611e-134A0A1S3XW61_TOBAC; transcription factor PIF1-like
STRINGXP_009758957.15e-93(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-13phytochrome interacting factor 3