PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443931.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 347aa MW: 38556.1 Da PI: 10.2508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	206	261	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+rW+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_016443931.1 206 KQRRRWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 261 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.161	203	263	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-30	204	265	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.1E-18	204	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-27	206	261	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MRKIDAFKRE LPLSVLLVKD AIVALRAESV QCRKSRTEPV LEEFIPLKKS SNEDNKAEVT 60 KDKDSSREKM SWMSSVQLWN SVQTTDEANN KQRSKLELKI RSPEEGNSSV TEDRFQSCKT 120 LNMGKAFSPF KGYSGFSVTT VRKDDKDELP GVPGLSLHTP GIIKLREETS GLNSKHNGSR 180 GGLSSVASSQ SNIRNGSLSQ QQAARKQRRR WSPELHRRFV DALQQLGGSQ VATPKQIREL 240 MQVDGLTNDE VKSHLQKYRL HTRRIPNTQT QPANQSGVAL WMSQDQYGGS SKMSSSQSGS 300 PQGPLHLSGS SRGTSTTVGD SMEEEDDVKS ESQSWKNHAH MSGKIDV

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MRKIDAFKRE LPLSVLLVKD AIVALRAESV QCRKSRTEPV LEEFIPLKKS SNEDNKAEVT  60
KDKDSSREKM SWMSSVQLWN SVQTTDEANN KQRSKLELKI RSPEEGNSSV TEDRFQSCKT  120
LNMGKAFSPF KGYSGFSVTT VRKDDKDELP GVPGLSLHTP GIIKLREETS GLNSKHNGSR  180
GGLSSVASSQ SNIRNGSLSQ QQAARKQRRR WSPELHRRFV DALQQLGGSQ VATPKQIREL  240
MQVDGLTNDE VKSHLQKYRL HTRRIPNTQT QPANQSGVAL WMSQDQYGGS SKMSSSQSGS  300
PQGPLHLSGS SRGTSTTVGD SMEEEDDVKS ESQSWKNHAH MSGKIDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-14	206	259	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	206	259	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	206	259	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	206	259	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	3e-80	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443931.1	0.0	PREDICTED: transcription factor LUX-like
TrEMBL	A0A1S3XVF9	0.0	A0A1S3XVF9_TOBAC; transcription factor LUX-like
STRING	XP_009625720.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-41	G2-like family protein