PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443565.1

Common Name

NtabSPL13

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 326aa MW: 35633.5 Da PI: 8.4283

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	22	98	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCevhsk+++v++ g+ qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_016443565.1 22 CLVDGCNADLSQCREYHRRHKVCEVHSKTAKVTIGGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 98 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-32	17	83	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.684	19	96	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-38	20	101	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.8E-30	22	95	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MESSSSSKRA KAPGNIAQVA HCLVDGCNAD LSQCREYHRR HKVCEVHSKT AKVTIGGRDQ 60 RFCQQCSRFH SLVEFDDGKR SCRKRLDGHN RRRRKPQPDS MAKTSGLLFT GQQGTKVLSF 120 SSQQIFPSAV VSSAWAGVVK TDSDMVLYNN INCMDNQNSF PDSSARSSYK GGNQFQFMQG 180 SERSLPEASI CQPLVDHPNS TAAVPSSGQK IFSSGLNEIV DSDRALSLLS SAPAVTREIG 240 FSHMVQQPAS IPRPRPQSQS VVHSLHYGGL SQYPFAQDFN SQPQDSAADS HVSNSSSLHF 300 HDMLQNAPDG SSTSGGCQQT LAFMWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-29	22	95	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	95	KRSCRKRLDGHNRRRRKP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00555	DAP	Transfer from AT5G50570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073300	0.0	LC073300.1 Nicotiana tabacum NtabSPL13 mRNA for squamosa promoter binding protein NtabSPL13, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311938.1	0.0	teosinte glume architecture 1-like
Refseq	XP_009621035.1	0.0	PREDICTED: teosinte glume architecture 1-like
Refseq	XP_009621036.1	0.0	PREDICTED: teosinte glume architecture 1-like
Refseq	XP_009621037.1	0.0	PREDICTED: teosinte glume architecture 1-like
Refseq	XP_009621038.1	0.0	PREDICTED: teosinte glume architecture 1-like
Refseq	XP_016443564.1	0.0	PREDICTED: teosinte glume architecture 1-like isoform X1
Refseq	XP_016443565.1	0.0	PREDICTED: teosinte glume architecture 1-like isoform X1
Refseq	XP_016443566.1	0.0	PREDICTED: teosinte glume architecture 1-like isoform X1
Refseq	XP_016443567.1	0.0	PREDICTED: teosinte glume architecture 1-like isoform X1
TrEMBL	A0A125SZN9	0.0	A0A125SZN9_TOBAC; Squamosa promoter binding protein NtabSPL13
STRING	XP_009621034.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-49	SBP family protein

Link Out ? help Back to Top
Entrez Gene	107768912

Publications ? help Back to Top
Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]