PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016443428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 278aa MW: 31037.3 Da PI: 9.5739 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.5 | 7.9e-32 | 120 | 176 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk +k+rkpylheSRh+hA+rR+Rg+gGrF XP_016443428.1 120 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 176 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-36 | 118 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.039 | 119 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.9E-27 | 121 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-24 | 122 | 144 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 124 | 144 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.8E-24 | 153 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MQSWWQGYGD NTMPLASENT IAQGNAEGGN EEKETNAQAT ESGSKGNNMQ YKQHLKHITS 60 TTAAIMGEHQ KELTGHSAML TSYPYPDLQY GGMMTYGAPV HPHLFEIHHA RMPLPLDMEE 120 EPVYVNAKQY HGILRRRQIR AKAELEKKAI KARKPYLHES RHQHAMRRAR GTGGRFLNTK 180 KLNDMDCTTE EPKKYGATIP THSGNSSGSG SSDQREKEGY TVQDMHKGRS RSFSTSNGHG 240 SSMYFSENTG NEQRNGYYGR GSWSLLVSQA SRGAAPNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-20 | 120 | 180 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-127 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443427.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
TrEMBL | A0A1S3XUQ6 | 0.0 | A0A1S3XUQ6_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
STRING | XP_009626580.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 8e-29 | nuclear factor Y, subunit A7 |