PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016443119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 31799.4 Da PI: 9.2719 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.6e-39 | 69 | 128 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWtkGGa+rnvPvGgg+r+nk+s+ XP_016443119.1 69 EAGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTKGGAMRNVPVGGGCRRNKRSK 128 6779*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-34 | 52 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 71 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.618 | 72 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 74 | 110 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MIFSSFPVYL DHPNLQQLQQ PDHQQGNPGL ENPQLPPLPP PAQVGGGLGS IRPGSMVDRA 60 RMAKIPLPEA GLKCPRCDST NTKFCYFNNY SLTQPRHFCK SCRRYWTKGG AMRNVPVGGG 120 CRRNKRSKSS NNNSNNNISK STGGQMGNSN VIISTSASPS SCSMEIIGHQ FSQPSTQFTP 180 LMAAFHNLNN YGGGFGTEMG FQIANNNNNN NNLLPSLAAN FEHTTNLYSF QVQGESTIEA 240 SNGVSQVTPP VKMESNSTKQ FLGSLENNQY WGGANSWIGF SGLNNSSTTS HLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443119.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A1S3XTB2 | 0.0 | A0A1S3XTB2_TOBAC; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_009777580.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 1e-42 | DNA binding with one finger 2.4 |