PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442767.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 457aa    MW: 50332.6 Da    PI: 6.7931
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-15171230155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_016442767.1 171 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 230
                     57*******************666664478446*************************98 PP
2AP2507.3e-16273324155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_016442767.1 273 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 324
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.41E-23171240No hitNo description
PfamPF008475.8E-12171230IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-18171240IPR016177DNA-binding domain
PROSITE profilePS5103219.44172238IPR001471AP2/ERF domain
SMARTSM003802.3E-29172244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-16172239IPR001471AP2/ERF domain
PRINTSPR003672.8E-6173184IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18273333IPR016177DNA-binding domain
CDDcd000181.44E-11273332No hitNo description
PfamPF008473.8E-10273324IPR001471AP2/ERF domain
SMARTSM003801.6E-31274338IPR001471AP2/ERF domain
PROSITE profilePS5103219.151274332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18274332IPR001471AP2/ERF domain
PRINTSPR003672.8E-6314334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MYTEGEKEVL GLNINGNDSS IFQNFLDTQI HQQTPPKLED FLGGDSSSLT QDSSSLTHQI  60
YEQQQNNGSA VYHQDFKNLA HGFHYQATAA AAFSNNSGSE VDNSVGTEFV SESCNELAYS  120
QCPPALSTGA LSLAVNTTNT TQCLEKEKAI VAVVDSESCK KITDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTATTNFPVS  240
NYTQELEEMK HMSKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR IGRVAGNKDL  300
YLGTFATEEE AAEAYDIAAI KFRGVNAVTN FEMNRYDVEA IMKSSLPVGG TAKRLKLSLE  360
AEQKSLSSNN QQQTTQSSSS NNSSSNINFG AMPPMSAIPC GVPFDATAPF YHHNFFHHLQ  420
SGNAGASDTS GAVTTMASAM PLLPSGAEFF IWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782438.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X3
RefseqXP_016442766.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X3
SwissprotQ52QU21e-153AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3XS370.0A0A1S3XS37_TOBAC; AP2-like ethylene-responsive transcription factor AIL6 isoform X3
TrEMBLA0A1U7WV010.0A0A1U7WV01_NICSY; AP2-like ethylene-responsive transcription factor AIL6 isoform X3
STRINGXP_009782436.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-151AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]