PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016442710.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 841aa MW: 92487.8 Da PI: 5.9417

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016442710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.5e-19	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_016442710.1 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP
2	START	176.8	1.3e-55	164	372	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d+ W ++++++++l+v s+g g+++l XP_016442710.1 164 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHSCSGVASRACGLVGLEPT-RVAEILKDRSSWFRDCRAVDVLNVMSTGsgGTIELL 257 7899****************************************************.8888888888********************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ Ry+ ++g++v++++S++++q+ p+ +++vRaellpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+ XP_016442710.1 258 YMQLYAPTTLAPaRDFWLMRYTSVTEDGSLVVCERSLNNTQNGPSmppVQNFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 352 ***************************************9988899***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+++ ++t++a+l+++++ XP_016442710.1 353 ESSTVLSQRTTMAALRHLRQ 372 *************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-19	9	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.775	14	78	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	18	80	IPR009057	Homeodomain-like
CDD	cd00086	1.26E-16	19	79	No hit	No description
Pfam	PF00046	1.6E-16	20	77	IPR001356	Homeobox domain
CDD	cd14686	2.38E-6	71	110	No hit	No description
PROSITE profile	PS50848	25.829	154	382	IPR002913	START domain
CDD	cd08875	6.21E-78	158	373	No hit	No description
SMART	SM00234	1.5E-39	163	373	IPR002913	START domain
SuperFamily	SSF55961	4.81E-36	164	374	No hit	No description
Pfam	PF01852	9.7E-53	164	372	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.4E-22	164	369	IPR023393	START-like domain
Pfam	PF08670	6.1E-50	698	840	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MMAVTSACKD SKMGMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENGFFR 120 QQTQTAALTT TDNNSCESVV TSGQQNVSAQ RPPRDASPAG LLSLAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIIA ISHSCSGVAS RACGLVGLEP TRVAEILKDR SSWFRDCRAV 240 DVLNVMSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VTEDGSLVVC ERSLNNTQNG 300 PSMPPVQNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLSQ 360 RTTMAALRHL RQISQEISHP TVTGWGRRPA ALRALGQRLS KGFNEAVNGF TDEGWSMLES 420 DGIDDVTLLV NSSPSKLMGA NISYANGFPS MSSAVLCAKA SMLLQNVPPV ILLRFLREHR 480 SEWADSGIDA YSAAAVKAGP CSIPVTRTGS FGGQIILPLS HTIEHEEFME VIRLESIGHY 540 QDDMIMPGDI FLLQLCSGVD ENAVGTCAEL VFAPIDASFA DDAPLLPSGF RIIPLDSKAD 600 ASSPNRTLDL ASTLEVGPAG SRPNGDYSKN SGSTKSVMTI AFQFAFEIHL QENIAAMARQ 660 YVRSIISSVQ RVALALSPSR LGSLPGLRSP PGTPEAQTLA RWICQSYRFF LGVELLKSVG 720 GGSESILKEI WHHSDALMCC SLKALPVFTF ANEAGLDMLE TTLVSLQDIT LEKIFDDNGR 780 KTLFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDPHC LCFMFINWSF 840 V

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MMAVTSACKD SKMGMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENGFFR  120
QQTQTAALTT TDNNSCESVV TSGQQNVSAQ RPPRDASPAG LLSLAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHSCSGVAS RACGLVGLEP TRVAEILKDR SSWFRDCRAV  240
DVLNVMSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VTEDGSLVVC ERSLNNTQNG  300
PSMPPVQNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLSQ  360
RTTMAALRHL RQISQEISHP TVTGWGRRPA ALRALGQRLS KGFNEAVNGF TDEGWSMLES  420
DGIDDVTLLV NSSPSKLMGA NISYANGFPS MSSAVLCAKA SMLLQNVPPV ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSIPVTRTGS FGGQIILPLS HTIEHEEFME VIRLESIGHY  540
QDDMIMPGDI FLLQLCSGVD ENAVGTCAEL VFAPIDASFA DDAPLLPSGF RIIPLDSKAD  600
ASSPNRTLDL ASTLEVGPAG SRPNGDYSKN SGSTKSVMTI AFQFAFEIHL QENIAAMARQ  660
YVRSIISSVQ RVALALSPSR LGSLPGLRSP PGTPEAQTLA RWICQSYRFF LGVELLKSVG  720
GGSESILKEI WHHSDALMCC SLKALPVFTF ANEAGLDMLE TTLVSLQDIT LEKIFDDNGR  780
KTLFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDPHC LCFMFINWSF  840
V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626659.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Refseq	XP_016442710.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1S3XS59	0.0	A0A1S3XS59_TOBAC; homeobox-leucine zipper protein ATHB-15-like
STRING	XP_009626659.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]