PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016442655.1 | ||||||||
Common Name | NtERF#111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27338.6 Da PI: 9.9476 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 29 | 79 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+tae+Aaka++aa+++++g+ XP_016442655.1 29 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAAKAYDAAAREFRGA 79 6********.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.6E-39 | 29 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.69E-20 | 29 | 86 | No hit | No description |
Pfam | PF00847 | 1.8E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 29 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-22 | 29 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.92 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAPKQQGGAI AVPVTAAVGK VNGISKEVHY RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD 60 TAEDAAKAYD AAAREFRGAK AKTNFPPPEE ENLKIAQNNL GVKINKNIND NNNRSPSQSS 120 TVESSSRDGL SPAVMVDSSP LDLSLGVKFP FQNHQLRTSP ISGGFPGCGF TGATPAVNHH 180 MYYLEALARA GVINLEKHQQ RKTVDFLGGS SGGSGSGTQS ESDSSSVIDF MRTDVKPTTR 240 TGLNLDLNFP PPENV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 29 | 86 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB669079 | 0.0 | AB669079.1 Nicotiana tabacum NtERF#111 mRNA for ethylene response factor #111, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311895.1 | 0.0 | ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_009622637.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
TrEMBL | R4WAH7 | 0.0 | R4WAH7_TOBAC; Ethylene response factor #111 | ||||
STRING | XP_009622637.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-28 | erf domain protein 9 |
Publications ? help Back to Top | |||
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