 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016442557.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 313aa MW: 35172 Da PI: 10.0263 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016442557.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 315 | 2.4e-96 | 34 | 313 | 16 | 301 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksids 110
+++++ +++++ + aerda+++er+ a++ek+ ++ erd a +qrd+a+aer+ a+ erdn+++al ++e +++ +l g+ +gtk ++
XP_016442557.1 34 DQEAFI--MNTKIRMLFAERDAAVEERDRAVIEKNTVLTERDLAIQQRDTAIAERDTAIKERDNAIAALHFQESTMNGTL--GC-RTRGTKRPNQ 123
223444..7888888999*****************************************************999866544..33.4577777776 PP
GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204
++++ + +ds r+ ++a+pi+ +e+ ++ ++k+++ +k +k ak+++k ++k ++ +++ + + skae++ +dl ++n++++D
XP_016442557.1 124 TKNHC-DNSTDSVCINRDVPLTDAFPISAISSEVAKALQVKRTKGNKGMSRKSAKSPRK-TKKVSEDLNRHLTTDGSKAEWDAQDLgSINQIKFD 216
66633.45555555568888999999998888888877777544444443333344443.44444555555555679*********88******* PP
GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
es++P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aRi+grKmS+++f++lL +Laa G+dls p+DLk++WAkHGtn+++t
XP_016442557.1 217 ESSMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARIGGRKMSGSVFSRLLTRLAAVGHDLSMPIDLKTYWAKHGTNRYIT 311
*********************************************************************************************** PP
GAGA_bind 300 ir 301
i+
XP_016442557.1 312 IK 313
*8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MDDGGRRESR RHRMDCSKGG HAPWNVVPPY QMKDQEAFIM NTKIRMLFAE RDAAVEERDR 60
AVIEKNTVLT ERDLAIQQRD TAIAERDTAI KERDNAIAAL HFQESTMNGT LGCRTRGTKR 120
PNQTKNHCDN STDSVCINRD VPLTDAFPIS AISSEVAKAL QVKRTKGNKG MSRKSAKSPR 180
KTKKVSEDLN RHLTTDGSKA EWDAQDLGSI NQIKFDESSM PIPVCTCTGI PRQCYKWGSG 240
GWQSSCCTTY LSEYPLPQLP NKRHARIGGR KMSGSVFSRL LTRLAAVGHD LSMPIDLKTY 300
WAKHGTNRYI TIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982315 | 0.0 | FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds. |
