PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 298aa    MW: 34257.9 Da    PI: 4.9847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-2098148155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp++   ++r++lg+f taeeAa  +++a+ +++g
  XP_016442410.1  98 KKFRGVRQRP-WGKWAAEIRDPVK---KTRIWLGTFETAEEAAMVYDQAAIQIRG 148
                     59********.**********654...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-3398155No hitNo description
SuperFamilySSF541713.99E-2299156IPR016177DNA-binding domain
PROSITE profilePS5103223.26199156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3199156IPR001471AP2/ERF domain
SMARTSM003802.2E-3899162IPR001471AP2/ERF domain
PfamPF008477.2E-1399148IPR001471AP2/ERF domain
PRINTSPR003675.5E-11100111IPR001471AP2/ERF domain
PRINTSPR003675.5E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEGKFSQSIK KCVVHRSIST KHENKLTPKV VRICYTDCDA TDSSSDDDFD DKEKKRVRKY  60
VTEIRLEKKV SCGDVKKSSN LSKKKKKMMD LKTNENVKKF RGVRQRPWGK WAAEIRDPVK  120
KTRIWLGTFE TAEEAAMVYD QAAIQIRGPD ALTNFMKPPV KKESVITSVS DYDSTGESEN  180
LCSPTSVLRH NDNNIGVTAT KIVTNEEMKD DRKRMEFVMQ NDQNGILLDD NLPLMDQCFL  240
KDFFDFRSPS PLMDDVLPVF CDDIDFPEME ILDGNGFLDE DLESCTWDVN DFLEDHCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2398155159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2398155462ATERF1
3gcc_A1e-2398155462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631670.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6
RefseqXP_016442410.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1S3XRA70.0A0A1S3XRA7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009631670.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-40cytokinin response factor 4