PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442381.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 149aa    MW: 16081.6 Da    PI: 10.2669
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly80.62.2e-259514955109
          Whirly  55 falsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnl 109
                     falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+ +P +dGsG+fv+l
  XP_016442381.1  95 FALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLSFKPNADGSGYFVSL 149
                     9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.0E-85187IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.22E-2657149IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.102.3E-1994149IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.4E-2194149IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAILKLAGFL RPRNQLLHKR LPGEGVRDSI WQHAINTLAG FSTVRQNIVA DAGKLTGRVF  60
APYSVFKGKA ALSAEPRLPT FCKLDQDIGL IGLLFALSAT EVGSLISIGT RDSCEFFHDP  120
SMLSSNAGQV RKSLSFKPNA DGSGYFVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A5e-49491491124StWhy2
3n1i_A5e-49491491124protein StWhy2
3n1j_A5e-49491491124Protein StWhy2
3n1k_A5e-49491491124protein StWhy2
3n1l_A5e-49491491124protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2345043e-66HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442381.11e-106PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like, partial
SwissprotD9J0349e-78WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S3XR041e-105A0A1S3XR04_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial-like
STRINGXP_009772771.14e-90(Nicotiana sylvestris)
STRINGXP_009598355.16e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-40WHIRLY 2