PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016442378.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 31079.7 Da PI: 6.796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 3e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l++++ ++G g+W++++ g+ R +k+c++rw +yl XP_016442378.1 15 KGLWSPDEDDKLKNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E+e ++ +++++G++ W+ Ia+ ++ gRt++++k++w++yl XP_016442378.1 68 RGAFSLDEEETILTLHAMFGNK-WSQIAQQLP-GRTDNEIKNHWHSYL 113 89********************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-22 | 9 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.111 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.76E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.212 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGCKLVDKTK QKHKKGLWSP DEDDKLKNYI IKHGHGCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGA FSLDEEETIL TLHAMFGNKW SQIAQQLPGR TDNEIKNHWH SYLKKRVSKM 120 AQQTTSGNRE SSPSSKKLIT QNSSLDSFEH IEGSLADSNQ SADISREPQK SNLPKVLFAE 180 WLSLHQFNGQ NFQNFDPSNN NFGYNNSELQ DIFMHSLPMN GGSYVNGINQ EVNNGIVDDI 240 FEPQLKFEES ISANGFEEFM SGEFSINDDV MYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763294.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Refseq | XP_016442378.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 5e-56 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A1S3XQZ6 | 0.0 | A0A1S3XQZ6_TOBAC; transcription factor LAF1-like | ||||
TrEMBL | A0A1U7VLR8 | 0.0 | A0A1U7VLR8_NICSY; transcription factor LAF1-like | ||||
STRING | XP_009763294.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-62 | myb domain protein 19 |
Publications ? help Back to Top | |||
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