PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442363.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 327aa    MW: 36978.6 Da    PI: 6.7094
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-322175155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wtp+LH++F++av+qLGG+e+AtPk+++++m+++gLtl+h+kSHLQkYRl
  XP_016442363.1 21 KPRLKWTPDLHQQFIDAVAQLGGPEEATPKSLMRVMNIHGLTLYHLKSHLQKYRL 75
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.7171878IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-291977IPR009057Homeodomain-like
SuperFamilySSF466896.09E-152076IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-222176IPR006447Myb domain, plants
PfamPF002492.5E-82374IPR001005SANT/Myb domain
PfamPF143791.3E-21118164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALQNAQQNK DMNLLLSSDA KPRLKWTPDL HQQFIDAVAQ LGGPEEATPK SLMRVMNIHG  60
LTLYHLKSHL QKYRLGKSQA TDQSFDDNKQ EEFREPQSDK LYLDNCDGAQ NQMNESLQIA  120
RALQMQMEVQ RKLHQQIEVQ RHLQLRIEAQ GKYLQSVLKK AQETLAGYGT SSVGVELAKA  180
ELSQLVSMVN MGCCPTSPLS AITEIDGSIS KDTERKQLNG EILCSLESSL TSSESSARKE  240
DQNNTRNTNT SIALSLNPET KEKKRRRNNI CVEQPSSKRC HSQRSDGNLA KIEFSETICL  300
NSMCPNDYEH GPKDIDLNKE VEQFQWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755174e-58HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442363.10.0PREDICTED: uncharacterized protein LOC107767787 isoform X2
SwissprotF4I2742e-82PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A1S3XQY00.0A0A1S3XQY0_TOBAC; uncharacterized protein LOC107767787 isoform X2
STRINGXP_009777109.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.14e-83G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]