PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016442362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 357aa MW: 40358.4 Da PI: 6.5124 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH++F++av+qLGG+e+AtPk+++++m+++gLtl+h+kSHLQkYRl XP_016442362.1 21 KPRLKWTPDLHQQFIDAVAQLGGPEEATPKSLMRVMNIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.717 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 19 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.99E-15 | 20 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-22 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-21 | 148 | 194 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MALQNAQQNK DMNLLLSSDA KPRLKWTPDL HQQFIDAVAQ LGGPEEATPK SLMRVMNIHG 60 LTLYHLKSHL QKYRLGKSQA TDQSFDDNKQ EGKLELCATV PENTKENEIS RGLNQRTYFD 120 AEFREPQSDK LYLDNCDGAQ NQMNESLQIA RALQMQMEVQ RKLHQQIEVQ RHLQLRIEAQ 180 GKYLQSVLKK AQETLAGYGT SSVGVELAKA ELSQLVSMVN MGCCPTSPLS AITEIDGSIS 240 KDTERKQLNG EILCSLESSL TSSESSARKE DQNNTRNTNT SIALSLNPET KEKKRRRNNI 300 CVEQPSSKRC HSQRSDGNLA KIEFSETICL NSMCPNDYEH GPKDIDLNKE VEQFQWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 4e-58 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016442362.1 | 0.0 | PREDICTED: uncharacterized protein LOC107767787 isoform X1 | ||||
Swissprot | F4I274 | 4e-80 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A1S3XRP9 | 0.0 | A0A1S3XRP9_TOBAC; uncharacterized protein LOC107767787 isoform X1 | ||||
STRING | XP_009777109.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6036 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-80 | G2-like family protein |
Publications ? help Back to Top | |||
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