PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016442243.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 274aa    MW: 29014.8 Da    PI: 7.9723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016442243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-1081106227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_016442243.1  81 KTRLCNKFNTAEGCKFGDKCNFAHGE 106
                     8***********************96 PP
2zf-CCCH34.14.6e-11241265126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C +fa+ G C +G+rC+FaHg
  XP_016442243.1 241 FKTKICENFAK-GLCTFGERCHFAHG 265
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356642042IPR000571Zinc finger, CCCH-type
PfamPF146082.23040No hitNo description
PROSITE profilePS501036.5123043IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-1477111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-878110IPR000571Zinc finger, CCCH-type
SMARTSM003560.00179106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.88279107IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-781106IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.38E-14142222IPR004088K Homology domain, type 1
SMARTSM003222.9E-10149219IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.0E-14150220IPR004088K Homology domain, type 1
PROSITE profilePS5008413.942150214IPR004088K Homology domain, type 1
CDDcd001056.77E-13152214No hitNo description
PfamPF000131.7E-8152216IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.7E-15238270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9239270IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7240266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286240267IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8241265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLYDLALAVI DLLADKLDSN DLIFCSTSGC PFGEGCHFLH YVPGGLKAVT QMLGSNPALP  60
AASRNSIAPS FPDGSSPPAV KTRLCNKFNT AEGCKFGDKC NFAHGEWELG KPMAPLHEES  120
HGRFQTHGRY GSRPETTPAG LGAAASFGSS ATAKISVDAS LAGPIIGKGG VNSKQISRVT  180
GAKFSIRDHE SDPNLRNIEL EGTIDQIGQA SQMVRELIQS VTAKSAAPMM KNPSSTATSN  240
FKTKICENFA KGLCTFGERC HFAHGAEELR RSGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442243.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3XQK90.0A0A1S3XQK9_TOBAC; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009628588.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-57C3H family protein