PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016442060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 85aa MW: 9480.32 Da PI: 10.2543 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 129.8 | 7.3e-41 | 18 | 85 | 3 | 70 |
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ ve++G+nPGl+vl+vvgglll flvgny+ly+yaqk+lPP+kkkPvskkklkre+lkqGv++PGe XP_016442060.1 18 TKDVEVQGFNPGLMVLIVVGGLLLAFLVGNYLLYMYAQKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 85 5679***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 0.008 | 18 | 85 | No hit | No description |
Pfam | PF04689 | 2.5E-39 | 21 | 85 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MDYEGDPPPS FDPMKNMTKD VEVQGFNPGL MVLIVVGGLL LAFLVGNYLL YMYAQKTLPP 60 KKKKPVSKKK LKRERLKQGV SAPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601142.1 | 2e-54 | PREDICTED: DNA-binding protein S1FA-like | ||||
Refseq | XP_016442060.1 | 2e-54 | PREDICTED: DNA-binding protein S1FA-like | ||||
Swissprot | P42553 | 2e-14 | S1FA1_ORYSJ; DNA-binding protein S1FA1 | ||||
TrEMBL | A0A1S3XQC2 | 4e-53 | A0A1S3XQC2_TOBAC; DNA-binding protein S1FA-like | ||||
STRING | XP_009601142.1 | 7e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |