PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016441727.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 385aa MW: 42325.5 Da PI: 7.8763

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016441727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.7e-39	54	114	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + XP_016441727.1 54 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 114 56789*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	57	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	58	112	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MLGDCEKMVL IPSSTTNEWP QQNNQTDEKT LMMSSNGGSD MEKPIQDPQQ QHQQQPPLKC 60 PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRIKRPSASS 120 SSTHDITITS SSALNNNISA PNPSHHHQIH GSHNIDLSST TSSNHLNPLF YGLTTERSDL 180 NNNPFARLFS SRVSSATDEG QVYSLTDSIP GLDRRLGLGF SSSLGLMAEN NYGHGFNSIK 240 QIQDVMTNSN ATNSSSLLSS YPMFGSSSTS SSTSTMASLI ASSLQRQKFI SNGNNFHGSA 300 PFEDLQMSGN NNNNNNVESG NGMTMLKEEK MESGGQNRLN WNNLSNHQNH QIHEQIMNTS 360 DPSLSWNGAW LDPSNMGSNS VPSLI

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MLGDCEKMVL IPSSTTNEWP QQNNQTDEKT LMMSSNGGSD MEKPIQDPQQ QHQQQPPLKC  60
PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRIKRPSASS  120
SSTHDITITS SSALNNNISA PNPSHHHQIH GSHNIDLSST TSSNHLNPLF YGLTTERSDL  180
NNNPFARLFS SRVSSATDEG QVYSLTDSIP GLDRRLGLGF SSSLGLMAEN NYGHGFNSIK  240
QIQDVMTNSN ATNSSSLLSS YPMFGSSSTS SSTSTMASLI ASSLQRQKFI SNGNNFHGSA  300
PFEDLQMSGN NNNNNNVESG NGMTMLKEEK MESGGQNRLN WNNLSNHQNH QIHEQIMNTS  360
DPSLSWNGAW LDPSNMGSNS VPSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX022891	7e-66	JX022891.1 UNVERIFIED: Solanum lycopersicoides voucher UCD:TGRC LA2408 putative Dof zinc finger protein-like (Dof01) gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016441727.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S3XPZ3	0.0	A0A1S3XPZ3_TOBAC; dof zinc finger protein DOF1.4-like
STRING	XP_009623141.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-38	Dof family protein