PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441576.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27484.3 Da    PI: 9.7897
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.2e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst klyeyss
  XP_016441576.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSS 59
                    8***********************************************96 PP
2K-box86.36.1e-29841711299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ + +q+e+a L++++enLq+++R+++Ge+L+ L++k+Lq+Le+qLe sl+ +R +K+++++++++el +k +  ++en++L kkl+
  XP_016441576.1  84 SEVKFWQREAALLRQQLENLQENHRQMMGEELSGLNVKDLQNLEKQLEMSLRGVRMRKDQIMIDEVQELNQKGNLSHQENMELYKKLD 171
                     67899********************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.483161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
CDDcd002659.41E-44277No hitNo description
SuperFamilySSF554558.63E-32276IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-2785170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.14686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIMIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TSKLYEYSST  60
SMKSVIERYN KAKEETHKLG DPISEVKFWQ REAALLRQQL ENLQENHRQM MGEELSGLNV  120
KDLQNLEKQL EMSLRGVRMR KDQIMIDEVQ ELNQKGNLSH QENMELYKKL DLARQENTEL  180
YKKVYGTRDA NAVSRNAMSS NSLRVNEDPH APLHLQLSQP QQQHYETPGT TKLGLSLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21174174MEF2C
5f28_B2e-21174174MEF2C
5f28_C2e-21174174MEF2C
5f28_D2e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-53HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755162e-53HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441570.11e-176PREDICTED: MADS-box transcription factor 23-like
RefseqXP_016441576.11e-176PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-111MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3XNR61e-175A0A1S3XNR6_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009619172.11e-169(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-90AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]