PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441573.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 685aa    MW: 74466.3 Da    PI: 8.2147
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.42e-05324342119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+ C+
  XP_016441573.1 324 CGRHRCEQTCHVGPCGHCQ 342
                     *****************96 PP
2zf-NF-X116.51.8e-05388405118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C +lCH+GpC+ C
  XP_016441573.1 388 CGNHVCLELCHPGPCGDC 405
                     ****************99 PP
3zf-NF-X122.72.2e-07446463118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+Cq+ CH G+C pC
  XP_016441573.1 446 CGVHRCQAVCHSGDCAPC 463
                     ****************** PP
4zf-NF-X119.32.4e-06542560119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_016441573.1 542 CGQHSCESLCHSGHCPPCL 560
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.83E-7145216No hitNo description
PROSITE profilePS500168.831154215IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590157212IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.48157213IPR001841Zinc finger, RING-type
SMARTSM004380.023269287IPR000967Zinc finger, NF-X1-type
PfamPF014224.9271286IPR000967Zinc finger, NF-X1-type
CDDcd060084.30E-10314362No hitNo description
PfamPF014224.5E-4324341IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018324343IPR000967Zinc finger, NF-X1-type
CDDcd060089.92E-7378423No hitNo description
PfamPF014223.1E-4388405IPR000967Zinc finger, NF-X1-type
SMARTSM004385.4E-4388407IPR000967Zinc finger, NF-X1-type
CDDcd060082.14E-11436484No hitNo description
PfamPF014221.1E-6446463IPR000967Zinc finger, NF-X1-type
SMARTSM004383.2E-5446465IPR000967Zinc finger, NF-X1-type
PfamPF0142211504515IPR000967Zinc finger, NF-X1-type
SMARTSM00438190504538IPR000967Zinc finger, NF-X1-type
CDDcd060085.36E-7532584No hitNo description
PfamPF014225.8E-5542559IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4542561IPR000967Zinc finger, NF-X1-type
PfamPF01422150599615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34599617IPR000967Zinc finger, NF-X1-type
PfamPF014223.3E-4652667IPR000967Zinc finger, NF-X1-type
SMARTSM004380.022652682IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MSFSSAQNNR RNNNSNRPRN TPVQSARREW VPRGSTATTT VSAAPVTTTV ITTVVSPVFN  60
LNGSSSAGNG REKDNVSVAL VNHRNQTYVG PNYDKGPAYA RRERGRDREN HNHQEIRVER  120
AVNGKINQGE HKWLKDPNLP QLVQEIQEKL LKGNIECMIC YDMVRRSAPV WSCSSCYSIF  180
HLNCIKKWAR APTSVDTSAE KNQGFNWRCP GCQSVQLTSS KEIRYICFCG KRQDPPSDLY  240
LTPHSCGEPC GKKLEKELPG HDLSEEDLCP HVCVLQCHPG PCPPCKAFAP ARSCPCGKEV  300
ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGPCGH CQVIVNAYCF CKKKTEVVLC  360
GDMGVKGDIK IEDGVFSCSS ACGRKLSCGN HVCLELCHPG PCGDCALLPS KVKTCCCGKT  420
SLEDERDSCL DPIPTCSKVC GKSLRCGVHR CQAVCHSGDC APCLVPVTQR CRCGSTSRTV  480
ECYKTQAEDE KFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSVTGGWNPH FCSMPCEKKL  540
RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPSPSCQ LPCSVPQPCG  600
HPPTHSCHFG DCLPCAVPVA KECVGGHVIL RNIPCGSKDI RCNKLCGKTR QCGLHACART  660
CHSSPCDFSA GPSNGSRASC GQTCG
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441573.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like, partial
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S3XNT30.0A0A1S3XNT3_TOBAC; NF-X1-type zinc finger protein NFXL1-like
STRINGXP_009622484.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1