PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 743aa MW: 82156.5 Da PI: 7.1014 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 29 | 84 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p++++r +L++ lgL rq+k+WFqNrR+++k XP_016441514.1 29 KKRYHRHTANQIQRLEAIFKECPHPDEKTRLQLSRDLGLAPRQIKFWFQNRRTQMK 84 678899***********************************************998 PP | |||||||
2 | START | 165 | 5.4e-52 | 225 | 476 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 +a a++el+++++ +ep+W+ks+ + +n + + ++f+++++ ++ea+r+sgvv+m+ lv ++d + +W+e ++ ka tl XP_016441514.1 225 IAGNAMEELIRLVQTNEPLWMKSAidgkDVLNFQNYDRIFPRANShlknhnVRIEASRDSGVVIMNGLALVDMFMDAN-KWQEFFPtivsKARTL 318 67899*********************99999*********999999**9999**************************.**************** PP EEECTT................................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE CS START 83 evissg................................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR 144 evissg + + +m+ elq+lsplvp R +f+R+++q ++ +w+ivdvS d +q++ ss + + XP_016441514.1 319 EVISSGvmgsrtstlqlvkknnrlnkeglvffpkvlpdARYMQMYEELQVLSPLVPtRQLYFLRFCQQIEQSSWAIVDVSYDITQENLYSSTSCK 413 **************************************************************************************977****** PP -EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 145 aellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++lpSg+li++++ng+skvtwvehv+++++ + h l r l++sgla+ga +wv tlqr cek XP_016441514.1 414 VHRLPSGCLIQDMPNGYSKVTWVEHVEVEEKGIiHRLCRDLIHSGLAFGAERWVGTLQRVCEK 476 *****************************99988***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-22 | 6 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.34E-19 | 11 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-18 | 27 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-17 | 29 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.28E-17 | 29 | 87 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.338 | 215 | 479 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.22E-33 | 216 | 326 | No hit | No description |
CDD | cd08875 | 5.18E-110 | 219 | 475 | No hit | No description |
SMART | SM00234 | 1.1E-36 | 224 | 476 | IPR002913 | START domain |
Pfam | PF01852 | 5.6E-44 | 225 | 476 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.22E-33 | 360 | 478 | No hit | No description |
SuperFamily | SSF55961 | 1.23E-22 | 497 | 733 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MEYGSGGGGG GGGTSSGGGD PRDAAERRKK RYHRHTANQI QRLEAIFKEC PHPDEKTRLQ 60 LSRDLGLAPR QIKFWFQNRR TQMKAQHERA DNCALRAEND KIRCENIAIR EALKNVICPS 120 CPPVTEDSYF DEQKLRIENM QLKEELDKVS SIAAKYIGRP ISQLPPVQPI HLSSLDLSMS 180 SFVGHGPNSL DLDLDLLPGS SLTIPSLAFS SLNLSDMDKS LMADIAGNAM EELIRLVQTN 240 EPLWMKSAID GKDVLNFQNY DRIFPRANSH LKNHNVRIEA SRDSGVVIMN GLALVDMFMD 300 ANKWQEFFPT IVSKARTLEV ISSGVMGSRT STLQLVKKNN RLNKEGLVFF PKVLPDARYM 360 QMYEELQVLS PLVPTRQLYF LRFCQQIEQS SWAIVDVSYD ITQENLYSST SCKVHRLPSG 420 CLIQDMPNGY SKVTWVEHVE VEEKGIIHRL CRDLIHSGLA FGAERWVGTL QRVCEKYACL 480 MVNSNPTHDL GGVIPSPEGK RSMMKLAKRM VSNFCASINP SNGHQWNTIS GLNEFEVRAT 540 LQKSTDPGQP NGVIISAATT IWLPVPPQNV FNFFRDERNR PQWDVLSNQN PVQEVAHIAN 600 GSHPGNCISV LRAYNTSQNN MLILQESCID SSGALVVYSP VDVPAINIAM SGEDPTYIPL 660 LPSGFTISPD GHQLDQDAAS CSSSSNASTI GGRSGGSLIT VVFQILVSSL PSAKMSPESV 720 NTVNNLIGST VHQIKAALNC STS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-160 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441514.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A1S3XNS4 | 0.0 | A0A1S3XNS4_TOBAC; homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
STRING | XP_009587298.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |