PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 22191.9 Da PI: 7.6613 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 140.8 | 3.4e-44 | 1 | 81 | 17 | 97 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mkkv+ +n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGf++yv+plk+yl+kyrelegek XP_016441192.1 1 MKKVITGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIGVLGFDEYVNPLKQYLNKYRELEGEK 81 9*****************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.06E-32 | 1 | 102 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-41 | 1 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-20 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.9E-19 | 19 | 37 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 22 | 38 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.9E-19 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 5.9E-19 | 57 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKKVITGNGK ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD IIWAIGVLGF 60 DEYVNPLKQY LNKYRELEGE KLNVPNKQQQ QQQQQQQQQL HDHAHSPSLP NYNSVYNSPS 120 GLGLPQPSFV STDQSFPLPL ISQNSIQSQL SQQEQQIDSV GHWKLQFLRW FWALNYHFLQ 180 RLISSSNHIY IGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 5e-33 | 1 | 76 | 18 | 93 | NF-YB |
4awl_B | 4e-33 | 1 | 76 | 19 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 4e-33 | 1 | 76 | 19 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798728.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 2e-48 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A1U7Y6H8 | 1e-140 | A0A1U7Y6H8_NICSY; nuclear transcription factor Y subunit B-7 | ||||
STRING | XP_009798728.1 | 1e-141 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 1e-47 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
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