PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 466aa MW: 52633.2 Da PI: 6.3504 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 467.7 | 6.7e-143 | 42 | 463 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA++vssg+le+a+ +L ++s+l+sp+gd+mqR+a+yfteALa r++rs++++yka+++++ s +se + ++k+f+e +P+lk+++ XP_016441062.1 42 LIHLLLACANHVSSGNLENANIALDHISQLSSPNGDTMQRIASYFTEALADRILRSWPGIYKAFRSTKLS--VVSEDILVRKMFFEFFPFLKVAF 134 689*************************************************************999998..69********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +++NqaI+ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lR+Tgv++ +ke l +++ L++ Ae+l++pf+fn v+++ledl+ XP_016441062.1 135 VVTNQAIVEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRLTGVHQ----QKEVLDQMAYVLTEEAEKLDIPFQFNQ-VVSQLEDLD 224 ******************************************************....9**************************.799****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230 +e+Lrvk+gEala+++v+qlh+ll +++++++ + d + ++ XP_016441062.1 225 VEKLRVKTGEALAISSVMQLHTLLghdnepqkksplpfkhsngvnlhrafinqntlgellekdmghmpngyspsndtasSSPLCSTTKMDGFPNA 319 ***************************************************************************9988777788889******* PP GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 +++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le+ lpr+s r kvE++llg+ei+n++aceg er+erhe+lekW +r++ aGF+ XP_016441062.1 320 LWGLSPKVMVVTEQDSNHNGTTLMERLSESLHYYAALFDCLESALPRTSLGRLKVEKMLLGEEIKNIIACEGIERKERHEKLEKWFQRFDVAGFG 414 *********************************************************************************************** PP GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vpls++a+ qa++ll+ ++s+gy+++ee+g++v++W+dr+L+s+S+Wr XP_016441062.1 415 NVPLSYYAMLQARRLLQSYNSEGYKIKEENGCVVICWHDRALFSISSWR 463 ************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.672 | 16 | 443 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-140 | 42 | 463 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPIQIFP MTSLSSNQWL KELKSEERGL YLIHLLLACA NHVSSGNLEN 60 ANIALDHISQ LSSPNGDTMQ RIASYFTEAL ADRILRSWPG IYKAFRSTKL SVVSEDILVR 120 KMFFEFFPFL KVAFVVTNQA IVEAMEGEKM VHIVDLNAAE PLQWRALLQD LSARPEGPPH 180 LRLTGVHQQK EVLDQMAYVL TEEAEKLDIP FQFNQVVSQL EDLDVEKLRV KTGEALAISS 240 VMQLHTLLGH DNEPQKKSPL PFKHSNGVNL HRAFINQNTL GELLEKDMGH MPNGYSPSND 300 TASSSPLCST TKMDGFPNAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL HYYAALFDCL 360 ESALPRTSLG RLKVEKMLLG EEIKNIIACE GIERKERHEK LEKWFQRFDV AGFGNVPLSY 420 YAMLQARRLL QSYNSEGYKI KEENGCVVIC WHDRALFSIS SWRCRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-41 | 30 | 465 | 7 | 381 | Protein SCARECROW |
5b3h_A | 5e-41 | 30 | 465 | 6 | 380 | Protein SCARECROW |
5b3h_D | 5e-41 | 30 | 465 | 6 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441062.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1S3XN24 | 0.0 | A0A1S3XN24_TOBAC; scarecrow-like protein 3 | ||||
STRING | XP_009761009.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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