PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441062.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 466aa    MW: 52633.2 Da    PI: 6.3504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.76.7e-143424631374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++vssg+le+a+ +L ++s+l+sp+gd+mqR+a+yfteALa r++rs++++yka+++++ s   +se + ++k+f+e +P+lk+++
  XP_016441062.1  42 LIHLLLACANHVSSGNLENANIALDHISQLSSPNGDTMQRIASYFTEALADRILRSWPGIYKAFRSTKLS--VVSEDILVRKMFFEFFPFLKVAF 134
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lR+Tgv++    +ke l +++  L++ Ae+l++pf+fn  v+++ledl+
  XP_016441062.1 135 VVTNQAIVEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRLTGVHQ----QKEVLDQMAYVLTEEAEKLDIPFQFNQ-VVSQLEDLD 224
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230
                     +e+Lrvk+gEala+++v+qlh+ll                                                       +++++++ + d + ++
  XP_016441062.1 225 VEKLRVKTGEALAISSVMQLHTLLghdnepqkksplpfkhsngvnlhrafinqntlgellekdmghmpngyspsndtasSSPLCSTTKMDGFPNA 319
                     ***************************************************************************9988777788889******* PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le+ lpr+s  r kvE++llg+ei+n++aceg er+erhe+lekW +r++ aGF+
  XP_016441062.1 320 LWGLSPKVMVVTEQDSNHNGTTLMERLSESLHYYAALFDCLESALPRTSLGRLKVEKMLLGEEIKNIIACEGIERKERHEKLEKWFQRFDVAGFG 414
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vpls++a+ qa++ll+ ++s+gy+++ee+g++v++W+dr+L+s+S+Wr
  XP_016441062.1 415 NVPLSYYAMLQARRLLQSYNSEGYKIKEENGCVVICWHDRALFSISSWR 463
                     ************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.67216443IPR005202Transcription factor GRAS
PfamPF035142.3E-14042463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPIQIFP MTSLSSNQWL KELKSEERGL YLIHLLLACA NHVSSGNLEN  60
ANIALDHISQ LSSPNGDTMQ RIASYFTEAL ADRILRSWPG IYKAFRSTKL SVVSEDILVR  120
KMFFEFFPFL KVAFVVTNQA IVEAMEGEKM VHIVDLNAAE PLQWRALLQD LSARPEGPPH  180
LRLTGVHQQK EVLDQMAYVL TEEAEKLDIP FQFNQVVSQL EDLDVEKLRV KTGEALAISS  240
VMQLHTLLGH DNEPQKKSPL PFKHSNGVNL HRAFINQNTL GELLEKDMGH MPNGYSPSND  300
TASSSPLCST TKMDGFPNAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL HYYAALFDCL  360
ESALPRTSLG RLKVEKMLLG EEIKNIIACE GIERKERHEK LEKWFQRFDV AGFGNVPLSY  420
YAMLQARRLL QSYNSEGYKI KEENGCVVIC WHDRALFSIS SWRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-41304657381Protein SCARECROW
5b3h_A5e-41304656380Protein SCARECROW
5b3h_D5e-41304656380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441062.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3XN240.0A0A1S3XN24_TOBAC; scarecrow-like protein 3
STRINGXP_009761009.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]