PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25755.7 Da PI: 7.7905 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 99 | 148 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp + +r++lg+f taeeAa+a+++ + +++ge XP_016440974.1 99 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFVTAEEAARAYDKKAVEFRGE 148 9*******.**********7.....337************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.841 | 98 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 98 | 157 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-36 | 98 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 98 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 99 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-12 | 99 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.37E-30 | 99 | 157 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MYHHHTLTQD QEFYFMVSAL RHVISGADGR ADGEAAQLLR EVENASAVTS ASILRRRSIV 60 EPTASATTYL ACRTSFHVKP ENLELQKGRK RRRNTKKEYR GVRQRPWGKW AAEIRDPHKA 120 QRVWLGTFVT AEEAARAYDK KAVEFRGEKA KTNFPISEYA TTVSTDHNNK LPLVVEDQLQ 180 VQNGLYNGEV KVAGDDNGES STQNGDDFWD TLEDDGLVKW ITKDMSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 97 | 156 | 4 | 64 | ATERF1 |
3gcc_A | 2e-21 | 97 | 156 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 92 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016440974.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A1S3XMC1 | 1e-169 | A0A1S3XMC1_TOBAC; ethylene-responsive transcription factor ERF071-like | ||||
STRING | XP_009587871.1 | 1e-144 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.2 | 5e-31 | ERF family protein |