PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440936.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 200aa    MW: 23240.6 Da    PI: 10.2889
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-194397256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    rk+ ++tkeq + Lee F+++ ++   +++eLA+kl+L+ rqV vWFqNrRa+ k
  XP_016440936.1 43 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 97
                    678899***********************************************98 PP
2HD-ZIP_I/II116.61.4e-3743131189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L   +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+
  XP_016440936.1  43 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCQNLNDENSRLKKELQELRS 131
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1825100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-183098IPR009057Homeodomain-like
PROSITE profilePS5007117.073999IPR001356Homeobox domain
SMARTSM003893.0E-1541103IPR001356Homeobox domain
PfamPF000464.5E-164397IPR001356Homeobox domain
CDDcd000864.28E-1243100No hitNo description
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
SMARTSM003402.4E-1799142IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-999131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEEKKTEGST SKNCKNDLRQ APNSTSPRNF NNFDNESKKN GMRKKLRLTK EQSTLLEESF  60
KRHTTLAMGQ KQELAAKLKL KPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCQNLNDENS  120
RLKKELQELR SIKIDQWASP FHLRLPKIRT IALCPSCQKT ENIKSEQKHC DLDCGNQKVA  180
SDAMSKEANS DTILVKEKNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440936.11e-144PREDICTED: homeobox-leucine zipper protein HAT9-like
SwissprotP466031e-47HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1S3XLX21e-143A0A1S3XLX2_TOBAC; homeobox-leucine zipper protein HAT9-like
STRINGXP_009767818.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.15e-46HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]