PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440909.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 300aa    MW: 32583.1 Da    PI: 4.8693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1780129255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  XP_016440909.1  80 SYVGVRKRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 129
                     79****887.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-1279129IPR001471AP2/ERF domain
CDDcd000182.13E-3079137No hitNo description
Gene3DG3DSA:3.30.730.105.1E-3080138IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1980138IPR016177DNA-binding domain
SMARTSM003806.5E-3480143IPR001471AP2/ERF domain
PROSITE profilePS5103222.28680137IPR001471AP2/ERF domain
PRINTSPR003678.2E-98192IPR001471AP2/ERF domain
PRINTSPR003678.2E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAEPTTPNSE SESSSYNSCS LSSTISSSSV LIKNINSKNR LKRCREEEEE NDGQTNVSKC  60
SNSSKKNGGN KTSDGSKHPS YVGVRKRAWG KWVSEIREPK KKSRIWLGTF ATPEMAARAH  120
DVAAMSIKGG SAILNFPQLA DLLPRPATCS PRDVQAAAVK AAHMDHLNPT ESSPAASEAS  180
MTSSSSSLSL VSGITSSSLC DDESTPAELE AEIPPPPPAA AMLAPQHEEL SEIVKLPKLD  240
TSYDSVESTQ EVLRFIESDW WDYYGTNCEY YFGGENINMG FNTGLEAVVS NSFESFLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1875138973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440909.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD35e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3XM480.0A0A1S3XM48_TOBAC; ethylene-responsive transcription factor TINY-like
STRINGXP_009782186.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]