PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440837.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 307aa    MW: 35426.1 Da    PI: 9.1908
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+  Ed ll +++k+ G g+W++ ++  g+ R++k+c++rw +yl
   XP_016440837.1 14 KGPWSSKEDSLLTNYIKENGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.47e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_016440837.1  67 RGNFTQDEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.915961IPR017930Myb domain
SuperFamilySSF466892.77E-2811108IPR009057Homeodomain-like
SMARTSM007175.3E-111363IPR001005SANT/Myb domain
PfamPF002498.7E-131461IPR001005SANT/Myb domain
CDDcd001672.68E-71661No hitNo description
PROSITE profilePS5129426.41662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2665117IPR009057Homeodomain-like
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1667112IPR001005SANT/Myb domain
CDDcd001679.03E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRKPCCAKE GLRKGPWSSK EDSLLTNYIK ENGEGQWRSL PKNAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF TQDEEDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKSAG  120
IERKPHKNFS KCSKKESRKG PQQEKSRKKQ GKKSNNKNNE GQIVQVEKIQ VFTPKPIRIS  180
SEVLSRNNSF ENVTLSTTCS SNSNFEEADV ENKEKEVKLE EVSFFPRDLN FGKLLEGDEN  240
LDEFLIQENS CISNKHSMLM NESMLEKVYE EYLLLLSENC YLQDDHQKEQ NFPLISVNVG  300
SGSYWSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121185110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440837.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A1S3XME40.0A0A1S3XME4_TOBAC; transcription factor MYB3-like
STRINGXP_009607630.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-65myb domain protein 5