PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 535aa MW: 59623 Da PI: 8.3563 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3e-18 | 17 | 98 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +s l +p kf+++++g s t l +sg+sW + l +++++ ++ +GW +Fvk++ L++gD +vF++dg+ f +v +f+ XP_016440817.1 17 IQSETLKIPSKFIKHMEGR--ASGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASFVKDHCLESGDALVFRYDGDLHF--TVLAFD 98 556789*******777777..4459***************..99999***************************997666..787776 PP | |||||||
2 | B3 | 57.5 | 2.5e-18 | 232 | 326 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f kv+++ +v+ s l +p +fa+eh +++++++ l +++g++W+v+ i ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e l+v XP_016440817.1 232 FMKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVHKCE--LRV 322 889999999*****************6..34999****************77566666699***********************998554..588 PP EEE- CS B3 95 kvfr 98 +v+r XP_016440817.1 323 HVLR 326 8877 PP | |||||||
3 | B3 | 48.7 | 1.4e-15 | 427 | 509 | 12 | 97 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 s l +p +f eh +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g + e++v+++ XP_016440817.1 427 GSYTLKVPYQFSMEHL--PNCRTEIVLRNLKGECWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYEMRVHIC 509 5567899****99996..45889****************8888887789999*********************998..566688887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-24 | 3 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-23 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.84E-17 | 7 | 98 | No hit | No description |
PROSITE profile | PS50863 | 14.043 | 7 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-13 | 9 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 16 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-23 | 224 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-24 | 225 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.78E-20 | 230 | 326 | No hit | No description |
Pfam | PF02362 | 5.3E-16 | 232 | 326 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.803 | 232 | 328 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-16 | 232 | 328 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.02E-24 | 411 | 509 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-23 | 411 | 509 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-19 | 414 | 509 | No hit | No description |
PROSITE profile | PS50863 | 12.717 | 416 | 512 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-11 | 416 | 512 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-13 | 419 | 509 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MWDAKRPHFL VGFNPSIQSE TLKIPSKFIK HMEGRASGTA FLVGPSGNSW PMDLIQQDDG 60 LFFHNGWASF VKDHCLESGD ALVFRYDGDL HFTVLAFDES SCEKEAAYNA DCSQGATNLY 120 NLALKKRDRG NSALLDCIVE GVPKKMRSTQ SPSECTAEDA VCSNGRSYAS SFLNEIENAG 180 NASNNTVTIA VPSQTEIVCS NPGNGTSEEP MWLSAQEAEK VARSFTSSFP NFMKVMKRFN 240 VSGSYTLNIP YQFATEHLPK CKVKILLHNL KGKTWTVNSI PTTRVQTSHT FCGGWLSFVR 300 DNNIDLGDIC IFELVHKCEL RVHVLRVEKE GNDYSSKQVA KAKTYDKRGS AHGKEKHGNM 360 LKSHQLHLSK ICSGDSVIRK PAQVKQGSFT KSCMSMKSVP EEKLAAESFI SNFPHFVRIM 420 KKFNISGSYT LKVPYQFSME HLPNCRTEIV LRNLKGECWT VNSIPTMKVQ TLHTFCGGWS 480 AFVRDNDIQM GDICIFELVG KYEMRVHICA IGKKGLDYRN GITSNESAIL ASLTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914524 | 1e-139 | CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 1e-139 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 1e-139 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016440817.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X3 | ||||
TrEMBL | A0A1S3XMC2 | 0.0 | A0A1S3XMC2_TOBAC; B3 domain-containing protein Os01g0723500-like isoform X3 | ||||
STRING | XP_009781392.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-21 | B3 family protein |