PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440636.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1679aa MW: 188414 Da PI: 4.9296

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgLt+rq ++WF+ rR k+k+ XP_016440636.1 24 PKRQMKTPFQLETLERVYAMETYPSEATRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-18	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	20	80	IPR001356	Homeobox domain
SMART	SM00389	2.8E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	1.76E-14	25	81	No hit	No description
PROSITE profile	PS50827	15.731	510	569	IPR018501	DDT domain
SMART	SM00571	5.4E-20	510	569	IPR018501	DDT domain
Pfam	PF02791	3.2E-16	512	566	IPR018501	DDT domain
Pfam	PF05066	1.0E-11	691	758	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.8E-7	875	918	IPR028942	WHIM1 domain
Pfam	PF15613	4.3E-13	1047	1119	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1679 aa Download sequence Send to blast
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDHGSGS 120 ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE 180 FDELPPGAFG TPIEMEERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE 240 PKIVSDKYGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE CGVEGQSINV MSQQSRQGRF 300 PSPPMDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM 360 KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR ERFLQKELLR VERKKQKEEL 420 RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL 480 ESFRESLCEF PPKSVQLKKP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF 540 LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY 600 LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL 660 RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALVGDKGLN VLDIAERIQK 720 SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ 780 RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEKCS ILDTCLVNGK 840 SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLKAL 900 VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF NDSSFNAVVE 960 GSQSPLGFPN SKNQGTAPTT LVKDESAVIV DNVQNHFESI SAEKSSVAQE TFMGELAIQP 1020 SGNTAERSRM QLKSFIGHKA EEMYAYRSLP LGQDRRRNRY WLLVASGSSE DPGSGRVFVE 1080 SPHGCWRLID TEEAFDCLLA SLDTRGVRES HLHIMLQKIE GPFKERVRRN MSYDDIIVQH 1140 GNKCKNESSA ASSSPASGAG ADSPSSTIYG MGSDSWETSS SFKIELGKNE EERKNAFKRY 1200 QGFQSWMWKE CLSSSILCAM RYGKKRCLPL LGICGHCLDS YPSEEGNCPS CNRMSGKVDM 1260 NTDFPEQAMD SMDNLKIDYN KLAVSNACPL RVRLMKALLS FLEVYVPCEA LQSSWTEDCR 1320 KTWGMKLQNS LSPEDLLQIL TQLEGVIMRD YLSADYETAE ELMGLCALSI NAACESTYPG 1380 SVPQLPWIPQ TTGAVALRLL ELDASISYDP QQKTEAELKN KVDSLPNPSL GYASMKDLQK 1440 VEPTEVDRDG PLREENWDYL SSMPSSSRSR QVVRGRGGGR PRGRLQKGSA SKIPESGRAG 1500 VRPIETLTQV LIKQGETHGQ RHVRGRRTVR KRRIEKKIVE EIQPDYLGDK GRRLTFVVPP 1560 RKHGREEFDM NVEGIEATND DSNSMEAADS DDCAPENTYE FNRSDLMEMS DEDQDGFAGD 1620 GNDDDNDDDD DDDDDDERYG SHGQNMARYG NMVEDDSDRD EDVNEDQESD SSVSRDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1679 aa Download sequence Send to blast

MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDHGSGS  120
ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE  180
FDELPPGAFG TPIEMEERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE  240
PKIVSDKYGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE CGVEGQSINV MSQQSRQGRF  300
PSPPMDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM  360
KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR ERFLQKELLR VERKKQKEEL  420
RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL  480
ESFRESLCEF PPKSVQLKKP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF  540
LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY  600
LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL  660
RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALVGDKGLN VLDIAERIQK  720
SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ  780
RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEKCS ILDTCLVNGK  840
SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLKAL  900
VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF NDSSFNAVVE  960
GSQSPLGFPN SKNQGTAPTT LVKDESAVIV DNVQNHFESI SAEKSSVAQE TFMGELAIQP  1020
SGNTAERSRM QLKSFIGHKA EEMYAYRSLP LGQDRRRNRY WLLVASGSSE DPGSGRVFVE  1080
SPHGCWRLID TEEAFDCLLA SLDTRGVRES HLHIMLQKIE GPFKERVRRN MSYDDIIVQH  1140
GNKCKNESSA ASSSPASGAG ADSPSSTIYG MGSDSWETSS SFKIELGKNE EERKNAFKRY  1200
QGFQSWMWKE CLSSSILCAM RYGKKRCLPL LGICGHCLDS YPSEEGNCPS CNRMSGKVDM  1260
NTDFPEQAMD SMDNLKIDYN KLAVSNACPL RVRLMKALLS FLEVYVPCEA LQSSWTEDCR  1320
KTWGMKLQNS LSPEDLLQIL TQLEGVIMRD YLSADYETAE ELMGLCALSI NAACESTYPG  1380
SVPQLPWIPQ TTGAVALRLL ELDASISYDP QQKTEAELKN KVDSLPNPSL GYASMKDLQK  1440
VEPTEVDRDG PLREENWDYL SSMPSSSRSR QVVRGRGGGR PRGRLQKGSA SKIPESGRAG  1500
VRPIETLTQV LIKQGETHGQ RHVRGRRTVR KRRIEKKIVE EIQPDYLGDK GRRLTFVVPP  1560
RKHGREEFDM NVEGIEATND DSNSMEAADS DDCAPENTYE FNRSDLMEMS DEDQDGFAGD  1620
GNDDDNDDDD DDDDDDERYG SHGQNMARYG NMVEDDSDRD EDVNEDQESD SSVSRDYSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440636.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1S3XL25	0.0	A0A1S3XL25_TOBAC; homeobox-DDT domain protein RLT1-like
STRING	XP_009613460.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator