PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440595.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 688aa MW: 77806.9 Da PI: 5.0394

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.3	4.7e-16	499	543	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_016440595.1 499 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 543 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.866	481	569	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	1.8E-4	484	535	IPR009057	Homeodomain-like
Pfam	PF02042	3.4E-13	500	543	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-17	601	686	No hit	No description
PROSITE profile	PS51745	19.571	604	688	IPR000270	PB1 domain
Pfam	PF00564	6.2E-15	604	686	IPR000270	PB1 domain
SMART	SM00666	7.1E-16	604	687	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.3E-15	605	685	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MPEFSPHVRY YYMDEYPLRN FAMCLGVGSY WTLPVFESSG DRCIGVLEYA FEANVGLDLY 60 SILDRLINNH RILKTMGLAL IPSWLACPQE IQEVWEQELA QVKEALDVTC KTHMLLFAQT 120 WIPVLDSSRT QMLITSPPTK YWSEEISSLE FLAVSDLHHV QIGQGLVGKV LSSKGSCFCR 180 DITQLSIDFY PLVPIARCAG FTACFAIFVR LNSACHMVLE FFLPRDEMLD RNPQSFLSKL 240 LATIREQLPS FFLDSGPSLF VEVIRTAPVD ELDSFEINQP QQVVRSKGNE KVVHFDSLNQ 300 DTADLGPSSS TDIGAHYMEI TNHTPDNGEE TVLQDSAHKQ GVEEADAMDK EKSSVHFKEN 360 KFAYTDSDIL ATSFVDSEQN LSTDKASLDE KLDSFKIGHR QLPSMVQYNT INQIFGFDPS 420 SSSDLEEIVT ADYGRDTQMN LQSKKRGEST QPDSAHQQTV EEADVADKRK HSVHVEENTN 480 SQNCPEKHKR IKRIEKEYGI SRSVLEEQFG KKLSDAAKSL GVARSTLKRM CRDYDIYRWP 540 RSKSANDVCS LSENKPVKRV EKQMGNSSRE DLQLPHASLS NGMDTTTTLT QRKVPIATFQ 600 SDNTMSVKVT YKDVTIRFPL SLSSGKIDLE TEVEKRLKLV PVGSYSIKYE DEDNDWIAIT 660 CDSDLEYGIH TLRSLGRTTM KMLVEPLN

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MPEFSPHVRY YYMDEYPLRN FAMCLGVGSY WTLPVFESSG DRCIGVLEYA FEANVGLDLY  60
SILDRLINNH RILKTMGLAL IPSWLACPQE IQEVWEQELA QVKEALDVTC KTHMLLFAQT  120
WIPVLDSSRT QMLITSPPTK YWSEEISSLE FLAVSDLHHV QIGQGLVGKV LSSKGSCFCR  180
DITQLSIDFY PLVPIARCAG FTACFAIFVR LNSACHMVLE FFLPRDEMLD RNPQSFLSKL  240
LATIREQLPS FFLDSGPSLF VEVIRTAPVD ELDSFEINQP QQVVRSKGNE KVVHFDSLNQ  300
DTADLGPSSS TDIGAHYMEI TNHTPDNGEE TVLQDSAHKQ GVEEADAMDK EKSSVHFKEN  360
KFAYTDSDIL ATSFVDSEQN LSTDKASLDE KLDSFKIGHR QLPSMVQYNT INQIFGFDPS  420
SSSDLEEIVT ADYGRDTQMN LQSKKRGEST QPDSAHQQTV EEADVADKRK HSVHVEENTN  480
SQNCPEKHKR IKRIEKEYGI SRSVLEEQFG KKLSDAAKSL GVARSTLKRM CRDYDIYRWP  540
RSKSANDVCS LSENKPVKRV EKQMGNSSRE DLQLPHASLS NGMDTTTTLT QRKVPIATFQ  600
SDNTMSVKVT YKDVTIRFPL SLSSGKIDLE TEVEKRLKLV PVGSYSIKYE DEDNDWIAIT  660
CDSDLEYGIH TLRSLGRTTM KMLVEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440595.1	0.0	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A1S3XKT2	0.0	A0A1S3XKT2_TOBAC; protein NLP7-like isoform X2
STRING	XP_009783719.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-33	Nin-like family protein