PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440594.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 832aa MW: 94361.7 Da PI: 5.6357

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	5.9e-16	643	687	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_016440594.1 643 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 687 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.866	625	713	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	2.2E-4	628	679	IPR009057	Homeodomain-like
Pfam	PF02042	4.2E-13	644	687	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-17	745	830	No hit	No description
SMART	SM00666	7.1E-16	748	831	IPR000270	PB1 domain
Pfam	PF00564	8.1E-15	748	830	IPR000270	PB1 domain
PROSITE profile	PS51745	19.571	748	832	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.9E-15	749	829	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MPIELKFSYR KRNDGINRWV FWTQHNGDEL NQVKSLFPIL RDSTQPDTNG DCQLNRLTIK 60 NLVELLDVQG TCLIQFWAPI RNNGGKTFLT TADQPFSFNG KIHEGLWAYR RVSLHTIASV 120 DATEIDETKR ICVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRNFAMCLG VGSYWTLPVF 180 ESSGDRCIGV LEYAFEANVG LDLYSILDRL INNHRILKTM GLALIPSWLA CPQEIQEVWE 240 QELAQVKEAL DVTCKTHMLL FAQTWIPVLD SSRTQMLITS PPTKYWSEEI SSLEFLAVSD 300 LHHVQIGQGL VGKVLSSKGS CFCRDITQLS IDFYPLVPIA RCAGFTACFA IFVRLNSACH 360 MVLEFFLPRD EMLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT APVDELDSFE 420 INQPQQVVRS KGNEKVVHFD SLNQDTADLG PSSSTDIGAH YMEITNHTPD NGEETVLQDS 480 AHKQGVEEAD AMDKEKSSVH FKENKFAYTD SDILATSFVD SEQNLSTDKA SLDEKLDSFK 540 IGHRQLPSMV QYNTINQIFG FDPSSSSDLE EIVTADYGRD TQMNLQSKKR GESTQPDSAH 600 QQTVEEADVA DKRKHSVHVE ENTNSQNCPE KHKRIKRIEK EYGISRSVLE EQFGKKLSDA 660 AKSLGVARST LKRMCRDYDI YRWPRSKSAN DVCSLSENKP VKRVEKQMGN SSREDLQLPH 720 ASLSNGMDTT TTLTQRKVPI ATFQSDNTMS VKVTYKDVTI RFPLSLSSGK IDLETEVEKR 780 LKLVPVGSYS IKYEDEDNDW IAITCDSDLE YGIHTLRSLG RTTMKMLVEP LN

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MPIELKFSYR KRNDGINRWV FWTQHNGDEL NQVKSLFPIL RDSTQPDTNG DCQLNRLTIK  60
NLVELLDVQG TCLIQFWAPI RNNGGKTFLT TADQPFSFNG KIHEGLWAYR RVSLHTIASV  120
DATEIDETKR ICVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRNFAMCLG VGSYWTLPVF  180
ESSGDRCIGV LEYAFEANVG LDLYSILDRL INNHRILKTM GLALIPSWLA CPQEIQEVWE  240
QELAQVKEAL DVTCKTHMLL FAQTWIPVLD SSRTQMLITS PPTKYWSEEI SSLEFLAVSD  300
LHHVQIGQGL VGKVLSSKGS CFCRDITQLS IDFYPLVPIA RCAGFTACFA IFVRLNSACH  360
MVLEFFLPRD EMLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT APVDELDSFE  420
INQPQQVVRS KGNEKVVHFD SLNQDTADLG PSSSTDIGAH YMEITNHTPD NGEETVLQDS  480
AHKQGVEEAD AMDKEKSSVH FKENKFAYTD SDILATSFVD SEQNLSTDKA SLDEKLDSFK  540
IGHRQLPSMV QYNTINQIFG FDPSSSSDLE EIVTADYGRD TQMNLQSKKR GESTQPDSAH  600
QQTVEEADVA DKRKHSVHVE ENTNSQNCPE KHKRIKRIEK EYGISRSVLE EQFGKKLSDA  660
AKSLGVARST LKRMCRDYDI YRWPRSKSAN DVCSLSENKP VKRVEKQMGN SSREDLQLPH  720
ASLSNGMDTT TTLTQRKVPI ATFQSDNTMS VKVTYKDVTI RFPLSLSSGK IDLETEVEKR  780
LKLVPVGSYS IKYEDEDNDW IAITCDSDLE YGIHTLRSLG RTTMKMLVEP LN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440594.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A1S3XL85	0.0	A0A1S3XL85_TOBAC; protein NLP7-like isoform X1
STRING	XP_009783719.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13981	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-46	Nin-like family protein