PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440593.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 499aa MW: 56055.3 Da PI: 7.4611

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.3	3.5e-19	305	350	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dAA++Lgv T+LKriCR y I RWP+ k XP_016440593.1 305 YGITLEVLKQHFGKKLTDAANSLGVARTTLKRICRDYEIYRWPRVK 350 579****************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.526	288	377	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-17	307	352	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-17	400	486	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-15	407	486	No hit	No description
PROSITE profile	PS51745	16.006	408	489	IPR000270	PB1 domain
SMART	SM00666	7.2E-14	408	489	IPR000270	PB1 domain
Pfam	PF00564	3.6E-14	409	487	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MLSWRQQSFC ISLSKSLKTS RQNWLQSFMR CVYISYVVFL TKFEQFTCIF VLLMTQILRH 60 MRSHGKGNSI PFKVVARAVE TLVKQHSLDI EALASSHLPM TVGAQVGEVA TSQVAGSLQR 120 VEVTRDMTVN FLGNENTTVN FLGNEMVKAD VYASNSAVSG SSGSGHGIYR VSGTHISGQY 180 QPAAVATLDN GDTMQFDAFF DMQDFFEFGQ PLSATKDKGD ANLVDSNQTT TTSIADNRRH 240 SPNLDDDVAR SLPGLELGIG TQIVQLGSEH HQVDDVEVDA RDLQRNVVHA DLEKQNKTKR 300 IKREYGITLE VLKQHFGKKL TDAANSLGVA RTTLKRICRD YEIYRWPRVK SRKHNCSLSQ 360 AELLQVVDRQ PSDSGPRHQQ YVDFSPGSGP KSATNSKELH VTMQSENFIS VKVTYGNRTV 420 RFPLSFSSGK RDLEEEVEKR IKLVGNSSIR YEDEEKDFIL ITCDSDLHYA MHTLRSLGRT 480 IIKMLVEIEP DYNHIIDSC

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MLSWRQQSFC ISLSKSLKTS RQNWLQSFMR CVYISYVVFL TKFEQFTCIF VLLMTQILRH  60
MRSHGKGNSI PFKVVARAVE TLVKQHSLDI EALASSHLPM TVGAQVGEVA TSQVAGSLQR  120
VEVTRDMTVN FLGNENTTVN FLGNEMVKAD VYASNSAVSG SSGSGHGIYR VSGTHISGQY  180
QPAAVATLDN GDTMQFDAFF DMQDFFEFGQ PLSATKDKGD ANLVDSNQTT TTSIADNRRH  240
SPNLDDDVAR SLPGLELGIG TQIVQLGSEH HQVDDVEVDA RDLQRNVVHA DLEKQNKTKR  300
IKREYGITLE VLKQHFGKKL TDAANSLGVA RTTLKRICRD YEIYRWPRVK SRKHNCSLSQ  360
AELLQVVDRQ PSDSGPRHQQ YVDFSPGSGP KSATNSKELH VTMQSENFIS VKVTYGNRTV  420
RFPLSFSSGK RDLEEEVEKR IKLVGNSSIR YEDEEKDFIL ITCDSDLHYA MHTLRSLGRT  480
IIKMLVEIEP DYNHIIDSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440593.1	0.0	PREDICTED: uncharacterized protein LOC107766340 isoform X4
TrEMBL	A0A1S3XKZ7	0.0	A0A1S3XKZ7_TOBAC; uncharacterized protein LOC107766340 isoform X4
STRING	XP_009783716.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-19	Nin-like family protein