PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440592.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 509aa MW: 56632.5 Da PI: 6.4715

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.3	3.6e-19	315	360	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dAA++Lgv T+LKriCR y I RWP+ k XP_016440592.1 315 YGITLEVLKQHFGKKLTDAANSLGVARTTLKRICRDYEIYRWPRVK 360 579****************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.526	298	387	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-17	317	362	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-17	410	496	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-15	417	496	No hit	No description
SMART	SM00666	7.2E-14	418	499	IPR000270	PB1 domain
PROSITE profile	PS51745	16.006	418	499	IPR000270	PB1 domain
Pfam	PF00564	3.7E-14	419	497	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MANPNNVELE AAKLLHKLIQ ESKDEPTKLA TKLYEILRHM RSHGKGNSIP FKVVARAVET 60 LVKQHSLDIE ALASSHLPMT VGAQVGEVAT SQVAGSLQRV EVTRDMTVNF LGNENTTVNF 120 LGNEMVKADV YASNSAVSGS SGSGHGIYRV SGTHISGHPR SATEATQDKG DAMQPGILFD 180 MFNSFEIGQY QPAAVATLDN GDTMQFDAFF DMQDFFEFGQ PLSATKDKGD ANLVDSNQTT 240 TTSIADNRRH SPNLDDDVAR SLPGLELGIG TQIVQLGSEH HQVDDVEVDA RDLQRNVVHA 300 DLEKQNKTKR IKREYGITLE VLKQHFGKKL TDAANSLGVA RTTLKRICRD YEIYRWPRVK 360 SRKHNCSLSQ AELLQVVDRQ PSDSGPRHQQ YVDFSPGSGP KSATNSKELH VTMQSENFIS 420 VKVTYGNRTV RFPLSFSSGK RDLEEEVEKR IKLVGNSSIR YEDEEKDFIL ITCDSDLHYA 480 MHTLRSLGRT IIKMLVEIEP DYNHIIDSC

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MANPNNVELE AAKLLHKLIQ ESKDEPTKLA TKLYEILRHM RSHGKGNSIP FKVVARAVET  60
LVKQHSLDIE ALASSHLPMT VGAQVGEVAT SQVAGSLQRV EVTRDMTVNF LGNENTTVNF  120
LGNEMVKADV YASNSAVSGS SGSGHGIYRV SGTHISGHPR SATEATQDKG DAMQPGILFD  180
MFNSFEIGQY QPAAVATLDN GDTMQFDAFF DMQDFFEFGQ PLSATKDKGD ANLVDSNQTT  240
TTSIADNRRH SPNLDDDVAR SLPGLELGIG TQIVQLGSEH HQVDDVEVDA RDLQRNVVHA  300
DLEKQNKTKR IKREYGITLE VLKQHFGKKL TDAANSLGVA RTTLKRICRD YEIYRWPRVK  360
SRKHNCSLSQ AELLQVVDRQ PSDSGPRHQQ YVDFSPGSGP KSATNSKELH VTMQSENFIS  420
VKVTYGNRTV RFPLSFSSGK RDLEEEVEKR IKLVGNSSIR YEDEEKDFIL ITCDSDLHYA  480
MHTLRSLGRT IIKMLVEIEP DYNHIIDSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783716.1	0.0	PREDICTED: uncharacterized protein LOC104232264 isoform X1
Refseq	XP_016440590.1	0.0	PREDICTED: uncharacterized protein LOC107766340 isoform X2
TrEMBL	A0A1S3XKS7	0.0	A0A1S3XKS7_TOBAC; uncharacterized protein LOC107766340 isoform X2
TrEMBL	A0A1U7X221	0.0	A0A1U7X221_NICSY; uncharacterized protein LOC104232264 isoform X1
STRING	XP_009783716.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-15	Nin-like family protein