PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 509aa MW: 56632.5 Da PI: 6.4715 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 60.3 | 3.6e-19 | 315 | 360 | 3 | 48 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dAA++Lgv T+LKriCR y I RWP+ k XP_016440591.1 315 YGITLEVLKQHFGKKLTDAANSLGVARTTLKRICRDYEIYRWPRVK 360 579****************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.526 | 298 | 387 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.6E-17 | 317 | 362 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.25E-17 | 410 | 496 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.7E-15 | 417 | 496 | No hit | No description |
SMART | SM00666 | 7.2E-14 | 418 | 499 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 16.006 | 418 | 499 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.7E-14 | 419 | 497 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MANPNNVELE AAKLLHKLIQ ESKDEPTKLA TKLYEILRHM RSHGKGNSIP FKVVARAVET 60 LVKQHSLDIE ALASSHLPMT VGAQVGEVAT SQVAGSLQRV EVTRDMTVNF LGNENTTVNF 120 LGNEMVKADV YASNSAVSGS SGSGHGIYRV SGTHISGHPR SATEATQDKG DAMQPGILFD 180 MFNSFEIGQY QPAAVATLDN GDTMQFDAFF DMQDFFEFGQ PLSATKDKGD ANLVDSNQTT 240 TTSIADNRRH SPNLDDDVAR SLPGLELGIG TQIVQLGSEH HQVDDVEVDA RDLQRNVVHA 300 DLEKQNKTKR IKREYGITLE VLKQHFGKKL TDAANSLGVA RTTLKRICRD YEIYRWPRVK 360 SRKHNCSLSQ AELLQVVDRQ PSDSGPRHQQ YVDFSPGSGP KSATNSKELH VTMQSENFIS 420 VKVTYGNRTV RFPLSFSSGK RDLEEEVEKR IKLVGNSSIR YEDEEKDFIL ITCDSDLHYA 480 MHTLRSLGRT IIKMLVEIEP DYNHIIDSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783716.1 | 0.0 | PREDICTED: uncharacterized protein LOC104232264 isoform X1 | ||||
Refseq | XP_016440590.1 | 0.0 | PREDICTED: uncharacterized protein LOC107766340 isoform X2 | ||||
TrEMBL | A0A1S3XKS7 | 0.0 | A0A1S3XKS7_TOBAC; uncharacterized protein LOC107766340 isoform X2 | ||||
TrEMBL | A0A1U7X221 | 0.0 | A0A1U7X221_NICSY; uncharacterized protein LOC104232264 isoform X1 | ||||
STRING | XP_009783716.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 2e-15 | Nin-like family protein |