PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440589.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 530aa MW: 59449.1 Da PI: 7.0164

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.2	3.8e-19	336	381	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dAA++Lgv T+LKriCR y I RWP+ k XP_016440589.1 336 YGITLEVLKQHFGKKLTDAANSLGVARTTLKRICRDYEIYRWPRVK 381 579****************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.526	319	408	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-17	338	383	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-17	431	517	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-15	438	517	No hit	No description
SMART	SM00666	7.2E-14	439	520	IPR000270	PB1 domain
PROSITE profile	PS51745	16.006	439	520	IPR000270	PB1 domain
Pfam	PF00564	4.0E-14	440	518	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MLSWRQQSFC ISLSKSLKTS RQNWLQSFMR CVYISYVVFL TKFEQFTCIF VLLMTQILRH 60 MRSHGKGNSI PFKVVARAVE TLVKQHSLDI EALASSHLPM TVGAQVGEVA TSQVAGSLQR 120 VEVTRDMTVN FLGNENTTVN FLGNEMVKAD VYASNSAVSG SSGSGHGIYR VSGTHISGHP 180 RSATEATQDK GDAMQPGILF DMFNSFEIGQ YQPAAVATLD NGDTMQFDAF FDMQDFFEFG 240 QPLSATKDKG DANLVDSNQT TTTSIADNRR HSPNLDDDVA RSLPGLELGI GTQIVQLGSE 300 HHQVDDVEVD ARDLQRNVVH ADLEKQNKTK RIKREYGITL EVLKQHFGKK LTDAANSLGV 360 ARTTLKRICR DYEIYRWPRV KSRKHNCSLS QAELLQVVDR QPSDSGPRHQ QYVDFSPGSG 420 PKSATNSKEL HVTMQSENFI SVKVTYGNRT VRFPLSFSSG KRDLEEEVEK RIKLVGNSSI 480 RYEDEEKDFI LITCDSDLHY AMHTLRSLGR TIIKMLVEIE PDYNHIIDSC

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MLSWRQQSFC ISLSKSLKTS RQNWLQSFMR CVYISYVVFL TKFEQFTCIF VLLMTQILRH  60
MRSHGKGNSI PFKVVARAVE TLVKQHSLDI EALASSHLPM TVGAQVGEVA TSQVAGSLQR  120
VEVTRDMTVN FLGNENTTVN FLGNEMVKAD VYASNSAVSG SSGSGHGIYR VSGTHISGHP  180
RSATEATQDK GDAMQPGILF DMFNSFEIGQ YQPAAVATLD NGDTMQFDAF FDMQDFFEFG  240
QPLSATKDKG DANLVDSNQT TTTSIADNRR HSPNLDDDVA RSLPGLELGI GTQIVQLGSE  300
HHQVDDVEVD ARDLQRNVVH ADLEKQNKTK RIKREYGITL EVLKQHFGKK LTDAANSLGV  360
ARTTLKRICR DYEIYRWPRV KSRKHNCSLS QAELLQVVDR QPSDSGPRHQ QYVDFSPGSG  420
PKSATNSKEL HVTMQSENFI SVKVTYGNRT VRFPLSFSSG KRDLEEEVEK RIKLVGNSSI  480
RYEDEEKDFI LITCDSDLHY AMHTLRSLGR TIIKMLVEIE PDYNHIIDSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440589.1	0.0	PREDICTED: uncharacterized protein LOC107766340 isoform X1
TrEMBL	A0A1S3XL82	0.0	A0A1S3XL82_TOBAC; uncharacterized protein LOC107766340 isoform X1
STRING	XP_009783716.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15579	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-15	Nin-like family protein