PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440588.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 805aa MW: 90701.8 Da PI: 5.7365

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.5	4e-16	627	671	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv T+LKr CR + I RWP+ k XP_016440588.1 627 GISRSVLEEQFGKKLSDAAKDLGVARTTLKRMCRDNDIYRWPRCK 671 6999**************************************855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.524	612	697	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	6.7E-4	613	660	IPR009057	Homeodomain-like
Pfam	PF02042	3.2E-13	628	670	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.11E-15	716	802	No hit	No description
PROSITE profile	PS51745	16.169	722	805	IPR000270	PB1 domain
SMART	SM00666	1.6E-11	722	804	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.5E-14	724	802	No hit	No description
Pfam	PF00564	1.1E-12	724	803	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MPVELKFSYR KEGDGINRWV FWTNRNGEEL NHIKSLFQFL RDSTHTDTNG DSQINRLTTK 60 NLVELLDVQG TCLIQFWAPI RINGGQTFLT TADQPFALNG KIHEGLWAYR RVCLHTIASV 120 DTTDITAAKR IHVHGRPARV FRSGMPEFSP HVRYYYMGEY PLRNFAMCLG VGSYWTVPVF 180 EGSGDRCIGV LEYAFDANEG LDICSILDRF INNHRILKTM GLALIPSWLA CPQEIQEVSE 240 QELAKVKEVL EVTCKTHKLL FAQTWIPVLD SSRTEMLITS APTKYCSEEI TSLEFLAVSD 300 LHHVRTGQGL VGKVFSSKGS CFCRDITQLS IDFYPLVPIA RSARFTACFA IFVRLKNASR 360 MVLEFFLPRD ETLDGNPQSF LSKLLATIGE QLPSFSLDSG PSFFVEVIGT ALVDGLDFFE 420 ISQPQPVIEP KGNKKVMHFD SLNQESADLG SSSSTDIAAH SMETTKDTPG IHGIAISQKI 480 LELENKEESV LLNSAHQQGV EEADAVDKER NFLNFKENEV SYTDSDIFAT FIVDPEQNLQ 540 KNLSIIEASL DEELEYFDID YGWDARMNLQ SKDKGETTQP DLAYQQRGEA ADVADKQRHS 600 LHVKESTNSH NCPEKHKRIK RIEKEYGISR SVLEEQFGKK LSDAAKDLGV ARTTLKRMCR 660 DNDIYRWPRC KSATDVCSVS ESKPVKGVEK QSVNSSQEDL QPHATLTDQR KKPTAAFQSD 720 NAMSVKVTCK DVTVKFPLSL SSGKIDLEAE IKKRLRIPIG SCSIKYEDED NDWIAITCDS 780 DLEYGIHTLR SLGRTTMKML VEPLN

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MPVELKFSYR KEGDGINRWV FWTNRNGEEL NHIKSLFQFL RDSTHTDTNG DSQINRLTTK  60
NLVELLDVQG TCLIQFWAPI RINGGQTFLT TADQPFALNG KIHEGLWAYR RVCLHTIASV  120
DTTDITAAKR IHVHGRPARV FRSGMPEFSP HVRYYYMGEY PLRNFAMCLG VGSYWTVPVF  180
EGSGDRCIGV LEYAFDANEG LDICSILDRF INNHRILKTM GLALIPSWLA CPQEIQEVSE  240
QELAKVKEVL EVTCKTHKLL FAQTWIPVLD SSRTEMLITS APTKYCSEEI TSLEFLAVSD  300
LHHVRTGQGL VGKVFSSKGS CFCRDITQLS IDFYPLVPIA RSARFTACFA IFVRLKNASR  360
MVLEFFLPRD ETLDGNPQSF LSKLLATIGE QLPSFSLDSG PSFFVEVIGT ALVDGLDFFE  420
ISQPQPVIEP KGNKKVMHFD SLNQESADLG SSSSTDIAAH SMETTKDTPG IHGIAISQKI  480
LELENKEESV LLNSAHQQGV EEADAVDKER NFLNFKENEV SYTDSDIFAT FIVDPEQNLQ  540
KNLSIIEASL DEELEYFDID YGWDARMNLQ SKDKGETTQP DLAYQQRGEA ADVADKQRHS  600
LHVKESTNSH NCPEKHKRIK RIEKEYGISR SVLEEQFGKK LSDAAKDLGV ARTTLKRMCR  660
DNDIYRWPRC KSATDVCSVS ESKPVKGVEK QSVNSSQEDL QPHATLTDQR KKPTAAFQSD  720
NAMSVKVTCK DVTVKFPLSL SSGKIDLEAE IKKRLRIPIG SCSIKYEDED NDWIAITCDS  780
DLEYGIHTLR SLGRTTMKML VEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783715.1	0.0	PREDICTED: protein NLP7-like isoform X2
Refseq	XP_016440588.1	0.0	PREDICTED: protein NLP7-like isoform X3
TrEMBL	A0A1S3XKZ1	0.0	A0A1S3XKZ1_TOBAC; protein NLP7-like isoform X3
TrEMBL	A0A1U7XB80	0.0	A0A1U7XB80_NICSY; protein NLP7-like isoform X2
STRING	XP_009783714.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-42	NIN like protein 7