PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016440587.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 810aa MW: 91257.5 Da PI: 5.6482

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016440587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.5	4e-16	632	676	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv T+LKr CR + I RWP+ k XP_016440587.1 632 GISRSVLEEQFGKKLSDAAKDLGVARTTLKRMCRDNDIYRWPRCK 676 6999**************************************855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.524	617	702	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	6.7E-4	618	665	IPR009057	Homeodomain-like
Pfam	PF02042	3.2E-13	633	675	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.14E-15	721	807	No hit	No description
SMART	SM00666	1.6E-11	727	809	IPR000270	PB1 domain
PROSITE profile	PS51745	16.169	727	810	IPR000270	PB1 domain
Pfam	PF00564	1.1E-12	729	808	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.6E-14	729	807	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MPVELKFSYR KEGDGINRWV FWTNRNGEEL NHIKSLFQFL RDSTHTDTNG DSQINRLTTK 60 NLVELLDVQG TCLIQFWAPI RINGGQTFLT TADQPFALNG KIHEGLWAYR RVCLHTIASV 120 DTTDITAAKR IHVHGRPARV FRSGMPEFSP HVRYYYMGEY PLRNFAMCLG VGSYWTVPVF 180 EGSGDRCIGV LEYAFDANEG LDICSILDRF INNHRILKTM GLALIPSWLA CPQEIQEVSE 240 QELAKVKEVL EVTCKTHKLL FAQTWIPVLD SSRTEMLITS APTKYCSEEI TSLEFLAVSD 300 LHHVRTGQGL VGKVFSSKGS CFCRDITQLS IDFYPLVPIA RSARFTACFA IFVRLKNASR 360 MVLEFFLPRD ETLDGNPQSF LSKLLATIGE QLPSFSLDSG PSFFVEVIGT ALVDGLDFFE 420 ISQPQPVIEP KGNKKVMHFD SLNQESADLG SSSSTDIAAH SMETTKDTPG IHGIAISQKI 480 LELENKEESV LLNSAHQQGV EEADAVDKER NFLNFKENEV SYTDSDIFAT FIVDPEQNLQ 540 KNLSIIEASL DEELEYFDIE IITVDYGWDA RMNLQSKDKG ETTQPDLAYQ QRGEAADVAD 600 KQRHSLHVKE STNSHNCPEK HKRIKRIEKE YGISRSVLEE QFGKKLSDAA KDLGVARTTL 660 KRMCRDNDIY RWPRCKSATD VCSVSESKPV KGVEKQSVNS SQEDLQPHAT LTDQRKKPTA 720 AFQSDNAMSV KVTCKDVTVK FPLSLSSGKI DLEAEIKKRL RIPIGSCSIK YEDEDNDWIA 780 ITCDSDLEYG IHTLRSLGRT TMKMLVEPLN

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MPVELKFSYR KEGDGINRWV FWTNRNGEEL NHIKSLFQFL RDSTHTDTNG DSQINRLTTK  60
NLVELLDVQG TCLIQFWAPI RINGGQTFLT TADQPFALNG KIHEGLWAYR RVCLHTIASV  120
DTTDITAAKR IHVHGRPARV FRSGMPEFSP HVRYYYMGEY PLRNFAMCLG VGSYWTVPVF  180
EGSGDRCIGV LEYAFDANEG LDICSILDRF INNHRILKTM GLALIPSWLA CPQEIQEVSE  240
QELAKVKEVL EVTCKTHKLL FAQTWIPVLD SSRTEMLITS APTKYCSEEI TSLEFLAVSD  300
LHHVRTGQGL VGKVFSSKGS CFCRDITQLS IDFYPLVPIA RSARFTACFA IFVRLKNASR  360
MVLEFFLPRD ETLDGNPQSF LSKLLATIGE QLPSFSLDSG PSFFVEVIGT ALVDGLDFFE  420
ISQPQPVIEP KGNKKVMHFD SLNQESADLG SSSSTDIAAH SMETTKDTPG IHGIAISQKI  480
LELENKEESV LLNSAHQQGV EEADAVDKER NFLNFKENEV SYTDSDIFAT FIVDPEQNLQ  540
KNLSIIEASL DEELEYFDIE IITVDYGWDA RMNLQSKDKG ETTQPDLAYQ QRGEAADVAD  600
KQRHSLHVKE STNSHNCPEK HKRIKRIEKE YGISRSVLEE QFGKKLSDAA KDLGVARTTL  660
KRMCRDNDIY RWPRCKSATD VCSVSESKPV KGVEKQSVNS SQEDLQPHAT LTDQRKKPTA  720
AFQSDNAMSV KVTCKDVTVK FPLSLSSGKI DLEAEIKKRL RIPIGSCSIK YEDEDNDWIA  780
ITCDSDLEYG IHTLRSLGRT TMKMLVEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440587.1	0.0	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A1S3XLP9	0.0	A0A1S3XLP9_TOBAC; protein NLP7-like isoform X2
STRING	XP_009783714.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-42	NIN like protein 7