PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 37450.2 Da PI: 8.0317 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.5 | 9.8e-31 | 20 | 73 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++F+ a+++LGG++kAtPk +l++m+v gLt++hvkSHLQ+YR+ XP_016440265.1 20 PRLRWTPHLHQCFLLAIQKLGGHDKATPKLVLQMMDVRGLTISHVKSHLQMYRS 73 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-30 | 15 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-15 | 18 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-24 | 20 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGNCERNNGG VRQYTRSKVP RLRWTPHLHQ CFLLAIQKLG GHDKATPKLV LQMMDVRGLT 60 ISHVKSHLQM YRSMKNDVNW QGERSKSQPG KLQSLEDGHS HLQQKEVCVE EEKVLRYHSC 120 CSPTIETLES PFMLLPPKRA RMETTSCKPE SLQNCRERIR EAVANYSYSG DDYMQTINYT 180 EKSGVNKEGI TAFRWQQICD TQREAAVLPL CHTASPSLDF FQTSNLLTNA VQESKHLKLS 240 MQEDENWKSS KKRKFDQSLR KIKNGEEEEE EDSCRLSLSL SLHHPCGQRS STSASTNEAI 300 SSYSDCNYWN SFSEKHSLNL DLSIALS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 21 | 75 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784028.1 | 0.0 | PREDICTED: uncharacterized protein LOC104232501 | ||||
Refseq | XP_016440265.1 | 0.0 | PREDICTED: uncharacterized protein LOC107766068 | ||||
TrEMBL | A0A1S3XJV8 | 0.0 | A0A1S3XJV8_TOBAC; uncharacterized protein LOC107766068 | ||||
TrEMBL | A0A1U7WZL5 | 0.0 | A0A1U7WZL5_NICSY; uncharacterized protein LOC104232501 | ||||
STRING | XP_009784028.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5433 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-31 | G2-like family protein |