PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 26593.5 Da PI: 4.9064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 102 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+++++g XP_016440103.1 102 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAALSMRG 152 799******.**********44465..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.799 | 102 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-29 | 102 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-14 | 102 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.95E-28 | 102 | 160 | No hit | No description |
SMART | SM00380 | 1.1E-33 | 102 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 102 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.9E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-10 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSSNSSPLEI DTSFSHSNFF FFQDQSPILQ WDDDLFFNNP WFDDDQSPIP YNSEKDENHQ 60 IFEESSDNTI ISKGSTSHGQ ELEEVTSQEE KEKEKEEEEE KHYIGVRKRP WGKYAAEIRD 120 STRNGIRVWL GTFDTAEEAA LAYDQAALSM RGPWSLLNFP LEKVKKSLEK IEYSCKDGLS 180 PAAVLKATHK TRRVKHKRSS RKKKNKENHN VLVFEDLGAE LLEELLMTSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-28 | 101 | 161 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY655738 | 0.0 | AY655738.1 Nicotiana tabacum ERF transcription factor 5 (ERF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777387.1 | 1e-170 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_016440103.1 | 1e-170 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 1e-49 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3XJL3 | 1e-169 | A0A1S3XJL3_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A1U7WBM0 | 1e-169 | A0A1U7WBM0_NICSY; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009777387.1 | 1e-170 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-29 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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