PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 1759aa MW: 197805 Da PI: 5.3467 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 40 | 94 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k XP_016439867.1 40 KRKMKTASQLEILENTYAVETYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 94 89999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-17 | 20 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.12E-15 | 30 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.034 | 35 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-16 | 37 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-12 | 38 | 94 | No hit | No description |
Pfam | PF00046 | 3.7E-15 | 40 | 94 | IPR001356 | Homeobox domain |
SMART | SM00571 | 1.9E-22 | 565 | 624 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.96 | 565 | 624 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.2E-18 | 566 | 621 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.5E-15 | 747 | 815 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 6.6E-8 | 964 | 1004 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.1E-12 | 1147 | 1219 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1759 aa Download sequence Send to blast |
MEPDSSAAAA AAAAAATAGG GSGSSDVEKK KLPEGEPKVK RKMKTASQLE ILENTYAVET 60 YPSEALRAEL SVKLGLSDRQ LQMWFCHRRL KDRKASTPVK RQKKEASPVA MADEMAVSGE 120 IGKEHASGSG SRVSPLGLVD LQLQQQHHQQ RVAHRPGTAV PRFRTEMPAL KRYYEPPQAI 180 SELRAIAFVE AQLGQPLRED GPILGMEFDP LPPGAFGAPI VAAMQHKPVG RPFEAQIYER 240 PDVNSIKGTT RTLHEYQFLP EQPSIRSDAY EQSVPSHYHS SIEVQSTRTM LSTGRSFMHG 300 SEQVASGYSI PGQIPTLNLL PEGKQGHISP ASAEADAVPR RSLVNIGVEA NYGGQPMTSL 360 ESPFMPRVIH DEERLERKRK SEEARIAREV EAHEKRIRKE LEKQDMLRRK REEQMRKDME 420 RQDRERRKEE ERLLREKLRE EERYQREQRR EMERREKFLL KESIKAEKMR LKEEMRREKE 480 VARLKAANVR ATARRIAKES TELIDDERLE LMELAASKKG LPSILSLDSE NLQNLEAFRD 540 MLIEFPPKSV SLRKPFGVEP WICSEEDVGN LLMVWRFLIT FSDVLRLWPF TLDEFVQAFH 600 DFDPRLLAEI HIALLKLIIK DIEDVARTPA SAVGANPNSG VNPGGGHPEI VEGAYAWGFD 660 IRSWQRHLNA LTWPEILRQF ALSAGFGPKL KKQSVEPAYP RDENEGNDGA DIISNLRSGV 720 AAEKAVAKLQ ERGFSNPRRS RHRLTPGTVK FAAFHILSLE GSKGLNILEV AEKIQKSGLR 780 DLKTSKTPEA SISAALSRDT KLFERTAPST YCLRDPYRKD PADADAILSA AREKIRVFKN 840 ECVNGEEAED VEKEVERDDE SESDAADDPE VDDLVSELKF AETPQSHKTD RTDGMNSTED 900 VSEILRFDLT QTPGDVSLQI STGIMHSESF GELKPIGTSG CQSAAIDADS SNLNQEDAVI 960 DESNAGQKWV QGLTEGEYSD LTVEERLDAL VALIGVANEG NSIRLVLEER LEAASALKKQ 1020 IWAEAQLDKR RFKEEFLLKV QYPSVCNNAE QFCSVTSREA RKSPLLAVDG HSEVAAIRSL 1080 QQEAMHKLPD ESNNSSNVAV EKACPMQEIY GGQDNSQFQH FAYVAEKSRS QLKAYIGHRA 1140 DETFVYRSLP LGQDRRRNRY WQFITSPSRN DPGSGRIFVE LRDGRWRLID SEKDFNALMA 1200 SLDVRGIRES HLHSMLQNIE ATFKETSRRY VYTEAKVSNL VKADTSETVP SNDCCSKTGS 1260 PKSTICISNC ETPEPSTSFL IGIGRNKMEN SDALSRYADL EKWMWEECVN TQFLCARKYG 1320 KMRCETLISI CNNCHDTYFL EDNHCHCCHT TFSLAKTSCF MEHVAQCKDK LEDLFRPLIS 1380 DSAPPLRIRL QRAQLASMEA CIPPEALEPV WSEVYRRSWG LKLHIASAAG DLLQILTLLE 1440 DSIKREYLMS DYETTTELLG AVSNSNLDRM AVLPWVPHTT SAVALRLMEL DSSLCYTQRQ 1500 KADSLKDKES ANFTTLKTNY ADMKRVAGII SAEAPLEYEN LEPDFSVKVG GRHGNSGQGR 1560 NHVRGAHSRV HGGRFQRKIS ASKSESAQRT STKNSGRFDH LPAWKSRDRG KARRKRGRRS 1620 VRNRQKPVKN VENAAVEKVP IPSQQNWKED EETAADQFEA PDNDSDPGTS GTEDDNGQAT 1680 GDDYENLMAD DYGTEPADGD DVDDYEDDHD EEDEEDGLAD ENVQRYFDAE SEEEGNRLMD 1740 GELVENPNKD SESSSEYSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439867.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2-like | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A1S3XJL7 | 0.0 | A0A1S3XJL7_TOBAC; homeobox-DDT domain protein RLT2-like | ||||
STRING | XP_009631239.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |