PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439543.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 357aa    MW: 39705.8 Da    PI: 4.3291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00063063451054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r R d+i++ ++ L+e++P      ++K s + +  +A++Y++sL
  XP_016439543.1 306 RLRKDKIRDTISILQEIIPGG----KGKDS-MVVIDEAIRYLRSL 345
                     7799***************97....68888.77779*****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.432296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-4306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00148306346No hitNo description
SuperFamilySSF474591.7E-5306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEKNFESSFL HQYSDLQLAH LNFSYPRFDI GQQYSFPTYM TPQSNEVPMN GNSPFFTFSG  60
LLQSKSSQPT EPLNWLYCSP PFYQGVARVS TSLPEEKLAP QAIEYPNAGT ASAQKRFLVF  120
DQSGDQTTLI YSSANATPVQ CPASLIPTPP ALYDLVKVDP EIKKNEASPF GHFLSDEYFE  180
ESTRDDVESE MREDTEELNA LLYSDDDNYY SEDDEETSTG HSPSTMTTHD LPEWFDERGE  240
EVASSAGPTK RHKLLDGSYD APSLRDTTTS AKAYTCSDLE DDAQSSCGNG FDQVSGAQCS  300
PSGKKRLRKD KIRDTISILQ EIIPGGKGKD SMVVIDEAIR YLRSLKVKAK SLGLDSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597068.10.0PREDICTED: transcription factor bHLH143-like
RefseqXP_009597069.10.0PREDICTED: transcription factor bHLH143-like
RefseqXP_016439542.10.0PREDICTED: transcription factor bHLH143-like
RefseqXP_016439543.10.0PREDICTED: transcription factor bHLH143-like
TrEMBLA0A1S3XIP10.0A0A1S3XIP1_TOBAC; transcription factor bHLH143-like
STRINGXP_009597068.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-07phytochrome interacting factor 3