PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 298aa MW: 31921.3 Da PI: 8.9347 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.5e-39 | 57 | 115 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++++cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ XP_016439189.1 57 SESIRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 115 57899***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.3E-32 | 59 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 60 | 114 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-25 | 60 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 62 | 98 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MIQELFAGNT TLIGGGGENI SKQSNTPSSS PLSSTSNSST LTTNIPAAAN ASSSSNSESI 60 RCPRCDSPNT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKNTNISTT 120 SAAKSSAAKL KASLPSFLGG LEHEISNSNP FLFSSPQNQY PLISILRGNH QNLSFNADTC 180 HFPNSVAVKE EGKSIGVNSY NQLPNSLGFC SNLWKNNQQN GSIIGEIQSS GLQELYQRLK 240 ASTSRCYPDH APSLFGNTAS SSSMILESAP VGAGGELGFW NPSISTWSDL QTANGAYF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226517 | 1e-57 | AC226517.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J19, complete sequence. | |||
GenBank | AC232774 | 1e-57 | AC232774.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J10, complete sequence. | |||
GenBank | HG975441 | 1e-57 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-57 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439189.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A1S3XH70 | 0.0 | A0A1S3XH70_TOBAC; dof zinc finger protein DOF5.7-like | ||||
STRING | XP_009775010.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 7e-33 | DOF zinc finger protein 1 |