PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016439117.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 739aa MW: 84963.9 Da PI: 5.1468

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016439117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	6.1e-22	131	214	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ + ++w+v++++leHnH + XP_016439117.1 131 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVEPSRWRVDEVKLEHNHLF 214 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-19	131	214	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-26	334	420	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	620	656	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	631	658	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.7E-5	631	653	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MEEGLGTSEQ LPEDEGGDNE VDSEEAFDIT CNGIESDGHQ VLNVEANELE ATTGQILEFE 60 SDEAEKNCEH VLDFESSDPR DNSHQLLEFH SNGLGGGDTT IIDDHTGSSP GKSYPPPVVG 120 MEFESYEDAY NYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF KTMKEANSRR 180 KETRTGCLAM IRLRLVEPSR WRVDEVKLEH NHLFDPERVQ NSKSHKKMDA GVKRKLEPAV 240 DVEVRTIKLY RTPAVENLGY GSSDERAFSG QIDGSARLKL KEGDTQVIYN FFCRMQLMRP 300 NFFYIMDLND EGYLKNVFWI DSRSRGAYAY FGDVVVVDTT CLSKKYDIPL LAFFGLNHHK 360 QTLLLGCGLL ADESFETYVW LLRAWLSCMS GRPPQSIITD RCMALQNAIS EVFPRAQHRL 420 NLSIILGSIF NTVGQVGESE VFREVLYNTV YNSLKVDEFE VAWEEMIHQF GFRGYGWLQS 480 LYEDRERWAP IYMKDTFFAG ISIDQPGEFM SPFFDGYVHK QTNLKEFFDI YDFVLQKMHQ 540 KEVLCDFESR EFSPVLRTRC NYELQLSKLY TKEIFLKFQD EMALMSNCSG IAQIHANGPI 600 ITYIVKERGA QGDTGDARDF EVTYDKMGVE VRCICSCFNF KGYLCRHALS VLNYNSIEEI 660 PNHYILTRWR KDFKRLYAPE LGSSNIDISN PVQRFDHLHK RAMQVVDEGM TSQDHYMVAW 720 QAFKESLNKV RLAADKHVS

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MEEGLGTSEQ LPEDEGGDNE VDSEEAFDIT CNGIESDGHQ VLNVEANELE ATTGQILEFE  60
SDEAEKNCEH VLDFESSDPR DNSHQLLEFH SNGLGGGDTT IIDDHTGSSP GKSYPPPVVG  120
MEFESYEDAY NYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF KTMKEANSRR  180
KETRTGCLAM IRLRLVEPSR WRVDEVKLEH NHLFDPERVQ NSKSHKKMDA GVKRKLEPAV  240
DVEVRTIKLY RTPAVENLGY GSSDERAFSG QIDGSARLKL KEGDTQVIYN FFCRMQLMRP  300
NFFYIMDLND EGYLKNVFWI DSRSRGAYAY FGDVVVVDTT CLSKKYDIPL LAFFGLNHHK  360
QTLLLGCGLL ADESFETYVW LLRAWLSCMS GRPPQSIITD RCMALQNAIS EVFPRAQHRL  420
NLSIILGSIF NTVGQVGESE VFREVLYNTV YNSLKVDEFE VAWEEMIHQF GFRGYGWLQS  480
LYEDRERWAP IYMKDTFFAG ISIDQPGEFM SPFFDGYVHK QTNLKEFFDI YDFVLQKMHQ  540
KEVLCDFESR EFSPVLRTRC NYELQLSKLY TKEIFLKFQD EMALMSNCSG IAQIHANGPI  600
ITYIVKERGA QGDTGDARDF EVTYDKMGVE VRCICSCFNF KGYLCRHALS VLNYNSIEEI  660
PNHYILTRWR KDFKRLYAPE LGSSNIDISN PVQRFDHLHK RAMQVVDEGM TSQDHYMVAW  720
QAFKESLNKV RLAADKHVS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439117.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_016439118.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1S3XHE3	0.0	A0A1S3XHE3_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X1
STRING	XP_009631083.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]