PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016438875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 29754.9 Da PI: 8.7258 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.7 | 1e-44 | 5 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+++yL++k+egk+ el++vi+ v iy+++Pw+Lp+ + +++++w+fF++ ++++a+g r+ r+t+sgyWkatg+ + v XP_016438875.1 5 SPGFRFYPTEEELISFYLHNKLEGKRPELDRVIPVVTIYNLDPWHLPNlpgeLCMGDTEQWFFFVPMQEREARGGRPCRTTTSGYWKATGSPTYV 99 69***************************999**************9657763334677************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ XP_016438875.1 100 YSSESKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRA 135 **********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-48 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.089 | 4 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-23 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVEISPGFRF YPTEEELISF YLHNKLEGKR PELDRVIPVV TIYNLDPWHL PNLPGELCMG 60 DTEQWFFFVP MQEREARGGR PCRTTTSGYW KATGSPTYVY SSESKVIGVK KSMVFYKGKA 120 PTGRKTKWKM NEYRAIEQET STSSTFSIPK LRHEMSLCRV YVISGSFRAF DRRPVEAVTR 180 ERAAVKNQEA GGRDNIISVK NERKIETISY PESSAMEEEY LNLHNQVPIN EARINSHNMV 240 KSDVQPLMSG WEQIHWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-35 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-35 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-35 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-35 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-35 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
4dul_A | 1e-35 | 2 | 161 | 15 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-35 | 2 | 161 | 15 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB021178 | 0.0 | AB021178.1 Nicotiana tabacum TERN mRNA for NAC-domain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438875.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 7e-82 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1S3XG35 | 0.0 | A0A1S3XG35_TOBAC; NAC domain-containing protein 90-like | ||||
STRING | XP_009597635.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 6e-85 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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